Variant report

Variant	rs17283761
Chromosome Location	chr3:150588182-150588183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150442212..150446114-chr3:150585527..150588995,3	MCF-7	breast:
2	chr3:150586336..150588790-chr3:150802703..150804787,2	MCF-7	breast:
3	chr3:150586127..150590392-chr3:150594321..150596821,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144893	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1444198	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs1444199	0.90[ASN][1000 genomes]
rs1444200	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16862877	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2034158	0.92[ASN][1000 genomes]
rs2037408	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2037409	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4679986	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680004	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4680006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680007	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56285716	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56659353	0.88[ASN][1000 genomes]
rs58091102	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59505012	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60107900	0.92[ASN][1000 genomes]
rs62282691	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6768276	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6775087	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6781091	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6783058	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73152585	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv877646	chr3:150582992-150641304	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17283761	UBQLN4	cis	parietal	SCAN
rs17283761	TM4SF1	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150583400-150588200	Weak transcription	Osteobl	bone
2	chr3:150583600-150588400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:150583800-150591200	Enhancers	Placenta	Placenta
4	chr3:150586400-150588200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:150586400-150588400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:150586400-150588400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:150586400-150591200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:150586400-150597000	Weak transcription	Left Ventricle	heart
9	chr3:150586600-150588200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:150586600-150588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:150587000-150589400	Enhancers	HSMMtube	muscle
12	chr3:150587400-150589000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:150587400-150589200	Enhancers	Fetal Heart	heart
14	chr3:150587800-150588200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:150588000-150588400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr3:150588000-150588400	Weak transcription	Fetal Muscle Leg	muscle

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