Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:150479297..150481963-chr3:150584720..150587723,3	MCF-7	breast:
2	chr3:150442212..150446114-chr3:150585527..150588995,3	MCF-7	breast:
3	chr3:150586336..150588790-chr3:150802703..150804787,2	MCF-7	breast:
4	chr3:150586127..150590392-chr3:150594321..150596821,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1444198	0.81[ASN][1000 genomes]
rs1444199	0.84[ASN][1000 genomes]
rs1444200	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16862877	0.82[ASN][1000 genomes]
rs17283761	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2034158	0.86[ASN][1000 genomes]
rs2037408	0.86[ASN][1000 genomes]
rs2037409	0.86[ASN][1000 genomes]
rs4679986	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4680004	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4680006	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4680007	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56285716	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56659353	0.82[ASN][1000 genomes]
rs60107900	0.86[ASN][1000 genomes]
rs62282691	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6768276	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6775087	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6781091	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6783058	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73152585	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv877646	chr3:150582992-150641304	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150583400-150588200	Weak transcription	Osteobl	bone
2	chr3:150583600-150588400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:150583800-150591200	Enhancers	Placenta	Placenta
4	chr3:150584800-150587400	Weak transcription	Fetal Heart	heart
5	chr3:150584800-150587800	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:150586400-150588200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:150586400-150588400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:150586400-150588400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:150586400-150591200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:150586400-150597000	Weak transcription	Left Ventricle	heart
11	chr3:150586600-150587000	Weak transcription	HSMMtube	muscle
12	chr3:150586600-150588200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:150586600-150588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: