Variant report

Variant	rs59505012
Chromosome Location	chr3:150586751-150586752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1444200	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17283761	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4680004	0.85[EUR][1000 genomes]
rs4680006	0.86[EUR][1000 genomes]
rs4680007	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56285716	0.82[EUR][1000 genomes]
rs62282691	0.83[EUR][1000 genomes]
rs6768276	0.85[EUR][1000 genomes]
rs6775087	0.82[EUR][1000 genomes]
rs6783058	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv877646	chr3:150582992-150641304	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150583400-150588200	Weak transcription	Osteobl	bone
2	chr3:150583600-150588400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:150583800-150591200	Enhancers	Placenta	Placenta
4	chr3:150584800-150587400	Weak transcription	Fetal Heart	heart
5	chr3:150584800-150587800	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:150586400-150588200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:150586400-150588400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:150586400-150588400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:150586400-150591200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:150586400-150597000	Weak transcription	Left Ventricle	heart
11	chr3:150586600-150587000	Weak transcription	HSMMtube	muscle
12	chr3:150586600-150588200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:150586600-150588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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