Variant report
| Variant | rs10513379 |
|---|---|
| Chromosome Location | chr3:150550368-150550369 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000244265 | Chromatin interaction |
| ENSG00000181788 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs12629256 | 0.92[EUR][1000 genomes] |
| rs1444198 | 0.87[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs1444199 | 0.83[EUR][1000 genomes] |
| rs16862877 | 0.88[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs2034158 | 0.83[EUR][1000 genomes] |
| rs2037408 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2037409 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2166060 | 0.90[ASN][1000 genomes] |
| rs4428229 | 0.83[CHB][hapmap] |
| rs56659353 | 0.85[EUR][1000 genomes] |
| rs58515064 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs59492796 | 0.90[ASN][1000 genomes] |
| rs60107900 | 0.82[EUR][1000 genomes] |
| rs60223801 | 0.90[ASN][1000 genomes] |
| rs60336215 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs60979559 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs61132047 | 0.94[EUR][1000 genomes] |
| rs73152585 | 0.83[EUR][1000 genomes] |
| rs7644595 | 1.00[CHB][hapmap];0.96[JPT][hapmap];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532662 | chr3:150180747-150633414 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 101 gene(s) | inside rSNPs | diseases |
| 2 | nsv818177 | chr3:150541363-150566422 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:150544400-150550400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
