Variant report

Variant	rs60336215
Chromosome Location	chr3:150543511-150543512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513379	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10935819	0.86[ASN][1000 genomes]
rs12629256	0.90[EUR][1000 genomes]
rs1444198	0.81[EUR][1000 genomes]
rs1444199	0.81[EUR][1000 genomes]
rs16862877	0.83[EUR][1000 genomes]
rs2034158	0.81[EUR][1000 genomes]
rs2037408	0.81[EUR][1000 genomes]
rs2037409	0.81[EUR][1000 genomes]
rs2166060	0.87[ASN][1000 genomes]
rs56659353	0.83[EUR][1000 genomes]
rs58515064	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59492796	0.87[ASN][1000 genomes]
rs60223801	0.87[ASN][1000 genomes]
rs60979559	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61132047	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73152585	0.81[EUR][1000 genomes]
rs7644595	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv818177	chr3:150541363-150566422	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150541800-150544000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:150542800-150544400	Enhancers	Right Ventricle	heart
3	chr3:150543000-150544600	Enhancers	Fetal Muscle Leg	muscle
4	chr3:150543200-150543600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:150543200-150543800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
6	chr3:150543200-150544200	Enhancers	Fetal Muscle Trunk	muscle
7	chr3:150543200-150544400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:150543200-150544600	Enhancers	Left Ventricle	heart
9	chr3:150543400-150543600	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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