Variant report

Variant	rs10935819
Chromosome Location	chr3:150541363-150541364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10513379	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2166060	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4428229	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs4679684	0.82[EUR][1000 genomes]
rs58515064	0.86[ASN][1000 genomes]
rs59492796	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60223801	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60336215	0.86[ASN][1000 genomes]
rs67728362	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7644595	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv818177	chr3:150541363-150566422	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10935819	UBQLN4	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150540800-150541600	Enhancers	Fetal Lung	lung
2	chr3:150541000-150541400	Enhancers	Ovary	ovary
3	chr3:150541200-150541600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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