Variant report

Variant	rs58515064
Chromosome Location	chr3:150541005-150541006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10513379	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10935819	0.86[ASN][1000 genomes]
rs12629256	0.87[EUR][1000 genomes]
rs16862877	0.80[EUR][1000 genomes]
rs56659353	0.80[EUR][1000 genomes]
rs60336215	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60979559	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61132047	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv3443318	chr3:150536512-150541160	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3370011	chr3:150538812-150541210	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150540800-150541600	Enhancers	Fetal Lung	lung
2	chr3:150541000-150541400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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