Variant report

Variant	rs12205667
Chromosome Location	chr6:33611525-33611526
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33611230..33613955-chr6:33617910..33620269,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10456075	0.87[AFR][1000 genomes]
rs10947415	0.82[EUR][1000 genomes]
rs10947418	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10947426	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11755257	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11757379	0.86[AFR][1000 genomes]
rs11757612	0.86[AFR][1000 genomes]
rs11758330	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12153870	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12189725	0.87[AFR][1000 genomes]
rs12193658	0.87[AFR][1000 genomes]
rs12195707	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12199132	0.87[AFR][1000 genomes]
rs12200154	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12203688	0.87[AFR][1000 genomes]
rs12205398	0.87[AFR][1000 genomes]
rs12206173	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12661400	0.87[AFR][1000 genomes]
rs12662447	0.87[AFR][1000 genomes]
rs13195171	0.86[AFR][1000 genomes]
rs13204162	0.87[AFR][1000 genomes]
rs13204975	0.87[AFR][1000 genomes]
rs13207407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13207666	0.87[AFR][1000 genomes]
rs13214874	0.87[AFR][1000 genomes]
rs13220421	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2227925	0.86[AFR][1000 genomes]
rs34517899	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34778247	0.87[AFR][1000 genomes]
rs35088242	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35095444	0.87[AFR][1000 genomes]
rs35698850	0.87[AFR][1000 genomes]
rs36097803	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818532	0.87[AFR][1000 genomes]
rs71565393	0.86[AFR][1000 genomes]
rs729376	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
3	esv1817557	chr6:33584788-33614127	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv1813933	chr6:33587443-33614127	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33602400-33617800	Weak transcription	NHLF	lung
2	chr6:33602400-33622600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:33602400-33636400	Weak transcription	HSMMtube	muscle
4	chr6:33602600-33614800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:33602600-33619200	Weak transcription	NHDF-Ad	bronchial
6	chr6:33602600-33623400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:33602600-33624400	Weak transcription	Small Intestine	intestine
8	chr6:33602600-33625400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:33602600-33625800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:33602600-33631600	Weak transcription	Osteobl	bone
11	chr6:33602800-33613400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:33602800-33624400	Weak transcription	Pancreas	Pancrea
13	chr6:33603000-33624000	Weak transcription	HSMM	muscle
14	chr6:33603000-33628600	Weak transcription	Primary B cells from cord blood	blood
15	chr6:33603200-33619600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:33603400-33623000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:33603400-33626000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:33603400-33640400	Weak transcription	HUVEC	blood vessel
19	chr6:33603400-33641200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:33604400-33614400	Weak transcription	HepG2	liver
21	chr6:33604800-33623000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:33604800-33623400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:33605000-33624400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:33605000-33625400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:33605200-33624000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr6:33605200-33624400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:33605200-33636400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:33606400-33613200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr6:33606600-33633000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:33606800-33626200	Weak transcription	A549	lung
31	chr6:33606800-33646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:33607400-33611600	Strong transcription	Thymus	Thymus
33	chr6:33607600-33612400	Strong transcription	Primary T cells from cord blood	blood
34	chr6:33607800-33611600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:33607800-33611800	Genic enhancers	Spleen	Spleen
36	chr6:33608000-33611600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr6:33608200-33611800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:33608200-33611800	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:33608200-33640800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:33608400-33611600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr6:33608400-33612000	Strong transcription	Lung	lung
42	chr6:33608600-33611800	Strong transcription	Dnd41	blood
43	chr6:33608600-33612200	Strong transcription	Fetal Intestine Small	intestine
44	chr6:33609200-33611600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:33609200-33611600	Strong transcription	Gastric	stomach
46	chr6:33609200-33616400	Weak transcription	Fetal Thymus	thymus
47	chr6:33609600-33623600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr6:33609800-33613200	Weak transcription	GM12878-XiMat	blood
49	chr6:33609800-33619400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:33610000-33615000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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