Variant report

Variant	rs10456075
Chromosome Location	chr6:33681603-33681604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33680227..33683293-chr6:33684221..33688907,5	K562	blood:
2	chr6:33679403..33680968-chr6:33681230..33682838,3	K562	blood:
3	chr6:33677771..33685795-chr6:33753004..33758704,10	MCF-7	breast:
4	chr6:33680227..33683145-chr6:33684696..33687420,2	K562	blood:
5	chr6:33681000..33683302-chr6:33729065..33730662,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction
ENSG00000137288	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10947426	0.87[AFR][1000 genomes]
rs10947432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153870	0.87[AFR][1000 genomes]
rs12189725	1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs12190155	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12195707	0.87[AFR][1000 genomes]
rs12199132	0.91[ASN][1000 genomes]
rs12203688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12205398	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12205667	0.87[AFR][1000 genomes]
rs12207382	0.82[JPT][hapmap]
rs12211490	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12211554	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs12211565	0.82[ASN][1000 genomes]
rs12215329	0.82[ASN][1000 genomes]
rs12660955	0.82[ASN][1000 genomes]
rs12661400	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13200063	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs13204162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13204975	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13206228	0.82[ASN][1000 genomes]
rs13207666	0.91[ASN][1000 genomes]
rs13214874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220421	0.87[AFR][1000 genomes]
rs2274459	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2281831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2281917	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2281918	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2281919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2296737	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2296749	0.82[ASN][1000 genomes]
rs34139049	0.88[ASN][1000 genomes]
rs34339105	0.82[ASN][1000 genomes]
rs34472165	0.82[ASN][1000 genomes]
rs34517899	0.87[AFR][1000 genomes]
rs34778247	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34869648	0.82[ASN][1000 genomes]
rs35088242	0.87[AFR][1000 genomes]
rs35095444	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35274562	0.88[ASN][1000 genomes]
rs35646598	0.88[ASN][1000 genomes]
rs35698850	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35721478	0.82[ASN][1000 genomes]
rs35797388	0.82[ASN][1000 genomes]
rs36097803	0.87[AFR][1000 genomes]
rs3818526	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3818532	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66670017	0.82[ASN][1000 genomes]
rs68168863	0.82[ASN][1000 genomes]
rs729376	1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs751095	0.82[ASN][1000 genomes]
rs755239	0.82[ASN][1000 genomes]
rs877187	1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs9296097	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9469554	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33679800-33681800	Weak transcription	Pancreas	Pancrea
2	chr6:33679800-33685000	Weak transcription	Lung	lung
3	chr6:33679800-33685600	Weak transcription	Placenta	Placenta
4	chr6:33680000-33682000	Weak transcription	Fetal Intestine Large	intestine
5	chr6:33680000-33682200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:33680000-33682200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:33680000-33683000	Weak transcription	Stomach Mucosa	stomach
8	chr6:33680000-33683800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:33680000-33683800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:33680000-33684000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:33680000-33684000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:33680000-33684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:33680000-33684000	Weak transcription	Esophagus	oesophagus
14	chr6:33680000-33684000	Weak transcription	Gastric	stomach
15	chr6:33680000-33684000	Weak transcription	Left Ventricle	heart
16	chr6:33680000-33684000	Weak transcription	HMEC	breast
17	chr6:33680000-33684000	Weak transcription	NHEK	skin
18	chr6:33680000-33684200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:33680000-33684200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:33680000-33684200	Weak transcription	Fetal Lung	lung
21	chr6:33680000-33684200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:33680000-33684400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:33680000-33684400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:33680000-33684600	Weak transcription	Fetal Brain Male	brain
25	chr6:33680000-33684600	Weak transcription	Fetal Kidney	kidney
26	chr6:33680000-33684800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:33680000-33684800	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:33680000-33684800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:33680000-33684800	Weak transcription	NHLF	lung
30	chr6:33680000-33685000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:33680000-33685000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:33680000-33685000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:33680000-33685000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:33680000-33685000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:33680000-33685000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr6:33680000-33685200	Weak transcription	Right Atrium	heart
37	chr6:33680000-33686000	Weak transcription	Right Ventricle	heart
38	chr6:33680000-33689400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:33680000-33690000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:33680000-33690200	Weak transcription	Psoas Muscle	Psoas
41	chr6:33680000-33693000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:33680000-33695200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:33680000-33695800	Weak transcription	Spleen	Spleen
44	chr6:33680000-33696200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:33680000-33698400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:33680000-33705000	Weak transcription	Brain Angular Gyrus	brain
47	chr6:33680200-33682000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr6:33680200-33682200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr6:33680200-33682200	Weak transcription	Liver	Liver
50	chr6:33680200-33684200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links