Variant report

Variant	rs35797388
Chromosome Location	chr6:33731984-33731985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33730661..33732317-chr6:33745927..33748398,2	MCF-7	breast:
2	chr6:33728564..33732066-chr6:33733725..33737558,5	MCF-7	breast:
3	chr6:33731707..33733377-chr6:33739681..33741307,2	K562	blood:
4	chr6:33730312..33733510-chr6:33847562..33850265,3	K562	blood:
5	chr6:33678876..33680749-chr6:33729962..33732135,3	K562	blood:

Variant related genes	Relation type
ENSG00000137288	Chromatin interaction
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10456075	0.82[ASN][1000 genomes]
rs10456420	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10456421	0.92[EUR][1000 genomes]
rs10947418	0.86[AFR][1000 genomes]
rs10947432	0.82[ASN][1000 genomes]
rs11755257	0.86[AFR][1000 genomes]
rs11757379	0.86[AFR][1000 genomes]
rs11757612	0.86[AFR][1000 genomes]
rs11758330	0.86[AFR][1000 genomes]
rs12153877	0.97[EUR][1000 genomes]
rs12189725	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12192035	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12192087	0.91[EUR][1000 genomes]
rs12193658	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12195409	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12198383	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12199132	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12200154	0.86[AFR][1000 genomes]
rs12203688	0.88[ASN][1000 genomes]
rs12204620	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12204992	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12205398	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12211490	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211554	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211565	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215329	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660955	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661400	0.88[ASN][1000 genomes]
rs12662447	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13195171	0.86[AFR][1000 genomes]
rs13200063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204162	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13206228	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207666	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13213889	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13214874	0.82[ASN][1000 genomes]
rs2227925	0.86[AFR][1000 genomes]
rs2274459	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281831	0.88[ASN][1000 genomes]
rs2296749	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34139049	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34339105	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34460651	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34472165	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34869648	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34884883	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35274562	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35328423	0.89[EUR][1000 genomes]
rs35366046	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35445446	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35646598	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35698850	0.88[ASN][1000 genomes]
rs35721478	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35964955	0.82[EUR][1000 genomes]
rs36122085	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3793080	0.96[EUR][1000 genomes]
rs3806107	0.96[EUR][1000 genomes]
rs66617522	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs66670017	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68168863	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925337	0.95[EUR][1000 genomes]
rs71565393	0.86[AFR][1000 genomes]
rs729376	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs751095	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755239	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877187	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv462898	chr6:33723383-33768897	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv602840	chr6:33723383-33768897	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33715200-33737800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33723400-33736600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:33726400-33738200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:33728000-33732000	Enhancers	Fetal Muscle Trunk	muscle
5	chr6:33729000-33736200	Weak transcription	HSMM	muscle
6	chr6:33729200-33732000	Enhancers	Placenta	Placenta
7	chr6:33729800-33734800	Weak transcription	HSMMtube	muscle
8	chr6:33730000-33738600	Weak transcription	A549	lung
9	chr6:33730200-33733200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:33730200-33736400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:33730200-33737800	Weak transcription	Right Atrium	heart
12	chr6:33730200-33738200	Weak transcription	Colonic Mucosa	Colon
13	chr6:33730200-33738400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:33730600-33738600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:33730800-33732000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:33730800-33736000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:33730800-33736600	Weak transcription	Brain Substantia Nigra	brain
18	chr6:33730800-33737600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:33730800-33738600	Weak transcription	Liver	Liver
20	chr6:33731400-33738400	Weak transcription	Spleen	Spleen
21	chr6:33731600-33738200	Weak transcription	Right Ventricle	heart
22	chr6:33731800-33733200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:33731800-33735400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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