Variant report

Variant	rs35964955
Chromosome Location	chr6:33770532-33770533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33767719..33770571-chr6:33780655..33782252,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10456420	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10456421	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12153877	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12192087	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12193658	0.92[ASN][1000 genomes]
rs12195409	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12198383	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12204620	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12204992	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12211490	0.81[EUR][1000 genomes]
rs12211554	0.81[EUR][1000 genomes]
rs12211565	0.81[EUR][1000 genomes]
rs12660955	0.83[EUR][1000 genomes]
rs12662447	0.92[ASN][1000 genomes]
rs13200063	0.82[EUR][1000 genomes]
rs13213889	0.80[EUR][1000 genomes]
rs2274459	0.83[EUR][1000 genomes]
rs2296749	0.83[EUR][1000 genomes]
rs34339105	0.80[EUR][1000 genomes]
rs34460651	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34472165	0.83[EUR][1000 genomes]
rs34778247	0.92[ASN][1000 genomes]
rs34869648	0.81[EUR][1000 genomes]
rs34884883	0.83[EUR][1000 genomes]
rs35095444	0.83[ASN][1000 genomes]
rs35445446	0.92[ASN][1000 genomes]
rs35797388	0.82[EUR][1000 genomes]
rs36122085	0.83[EUR][1000 genomes]
rs3793080	0.80[EUR][1000 genomes]
rs3806107	0.80[EUR][1000 genomes]
rs3818532	0.92[ASN][1000 genomes]
rs66617522	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66670017	0.83[EUR][1000 genomes]
rs68168863	0.83[EUR][1000 genomes]
rs72880510	0.83[ASN][1000 genomes]
rs751095	0.83[EUR][1000 genomes]
rs755239	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33757600-33775800	Weak transcription	Right Atrium	heart
2	chr6:33763600-33771600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:33766000-33776000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:33766800-33776400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:33768400-33770600	Weak transcription	NHDF-Ad	bronchial
6	chr6:33768800-33772400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:33769000-33771400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:33769000-33772200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:33769200-33771600	Enhancers	Brain Germinal Matrix	brain
10	chr6:33769200-33773200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:33769400-33770600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:33769400-33770800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:33769600-33770800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:33769600-33770800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:33769600-33771000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:33769800-33770600	Enhancers	Fetal Brain Male	brain
17	chr6:33769800-33770800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:33770000-33771200	Enhancers	Fetal Muscle Leg	muscle
19	chr6:33770000-33773000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:33770200-33770600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:33770200-33770800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:33770200-33771000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:33770200-33771000	Enhancers	NH-A	brain
24	chr6:33770400-33770600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:33770400-33770600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr6:33770400-33770600	Bivalent Enhancer	Fetal Stomach	stomach
27	chr6:33770400-33770600	Enhancers	Osteobl	bone
28	chr6:33770400-33771000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:33770400-33771600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:33770400-33776000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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