Variant report

Variant	rs72880510
Chromosome Location	chr6:33729188-33729189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33674794..33680843-chr6:33726905..33731016,6	MCF-7	breast:
2	chr6:33727358..33730164-chr6:33732846..33736236,4	K562	blood:
3	chr6:33728239..33730038-chr6:33992593..33994238,2	MCF-7	breast:
4	chr6:33728564..33732066-chr6:33733725..33737558,5	MCF-7	breast:
5	chr6:33681000..33683302-chr6:33729065..33730662,2	MCF-7	breast:
6	chr6:33727069..33729812-chr6:33754645..33756635,3	MCF-7	breast:
7	chr6:33724784..33727400-chr6:33728214..33730024,2	MCF-7	breast:
8	chr6:33708694..33710403-chr6:33728367..33730684,2	MCF-7	breast:
9	chr6:33710878..33712572-chr6:33728483..33730415,2	K562	blood:
10	chr6:33717929..33721430-chr6:33728075..33731260,3	MCF-7	breast:
11	chr6:33684753..33687394-chr6:33728535..33731247,2	MCF-7	breast:
12	chr6:33710780..33712378-chr6:33728766..33730415,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction
ENSG00000137288	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10456420	0.91[ASN][1000 genomes]
rs10456421	0.91[ASN][1000 genomes]
rs12153877	0.91[ASN][1000 genomes]
rs12192087	0.91[ASN][1000 genomes]
rs12193658	0.91[ASN][1000 genomes]
rs12195409	0.91[ASN][1000 genomes]
rs12198383	0.91[ASN][1000 genomes]
rs12204620	0.91[ASN][1000 genomes]
rs12204992	0.91[ASN][1000 genomes]
rs12662447	0.91[ASN][1000 genomes]
rs34460651	0.83[ASN][1000 genomes]
rs34778247	0.91[ASN][1000 genomes]
rs35095444	1.00[ASN][1000 genomes]
rs35445446	0.91[ASN][1000 genomes]
rs35964955	0.83[ASN][1000 genomes]
rs3818532	0.91[ASN][1000 genomes]
rs66617522	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv462898	chr6:33723383-33768897	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv602840	chr6:33723383-33768897	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33715200-33737800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33715600-33729400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:33719800-33729200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:33720200-33730600	Weak transcription	Spleen	Spleen
5	chr6:33720600-33729400	Weak transcription	Fetal Intestine Large	intestine
6	chr6:33721000-33729400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:33723400-33729800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:33723400-33736600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:33724000-33730200	Enhancers	Stomach Mucosa	stomach
10	chr6:33725200-33729200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:33725200-33729600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:33725200-33729800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:33726000-33731000	Enhancers	Fetal Stomach	stomach
14	chr6:33726200-33729600	Enhancers	Liver	Liver
15	chr6:33726200-33731000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:33726200-33731400	Enhancers	Fetal Lung	lung
17	chr6:33726400-33729200	Weak transcription	Placenta	Placenta
18	chr6:33726400-33738200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:33727000-33730800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:33727800-33729600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:33728000-33729200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:33728000-33729200	Bivalent Enhancer	HepG2	liver
23	chr6:33728000-33730000	Weak transcription	Hela-S3	cervix
24	chr6:33728000-33730200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:33728000-33730800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:33728000-33731400	Enhancers	Fetal Muscle Leg	muscle
27	chr6:33728000-33732000	Enhancers	Fetal Muscle Trunk	muscle
28	chr6:33728200-33730400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:33728400-33729600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:33728600-33730000	Enhancers	Fetal Thymus	thymus
31	chr6:33728600-33730600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:33728800-33729400	Enhancers	A549	lung
33	chr6:33728800-33730000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:33728800-33730000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:33728800-33730000	Enhancers	Primary hematopoietic stem cells	blood
36	chr6:33728800-33730800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:33728800-33731600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr6:33728800-33731600	Enhancers	Right Ventricle	heart
39	chr6:33729000-33729200	Enhancers	Gastric	stomach
40	chr6:33729000-33729600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:33729000-33729800	Enhancers	Psoas Muscle	Psoas
42	chr6:33729000-33730000	Enhancers	Left Ventricle	heart
43	chr6:33729000-33730000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr6:33729000-33730200	Enhancers	Colonic Mucosa	Colon
45	chr6:33729000-33730200	Genic enhancers	Right Atrium	heart
46	chr6:33729000-33730800	Enhancers	Fetal Intestine Small	intestine
47	chr6:33729000-33736200	Weak transcription	HSMM	muscle

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