Variant report

Variant	rs12153877
Chromosome Location	chr6:33765465-33765466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33763660..33765625-chr6:33771390..33773993,2	MCF-7	breast:
2	chr6:33764770..33766513-chr6:33787828..33789808,2	K562	blood:
3	chr6:33760609..33762790-chr6:33764065..33767376,3	K562	blood:
4	chr6:33761243..33763447-chr6:33764378..33766723,2	MCF-7	breast:
5	chr6:33756927..33758602-chr6:33764987..33767346,2	MCF-7	breast:
6	chr6:33764445..33767119-chr6:33821769..33823685,2	MCF-7	breast:
7	chr6:33700010..33701892-chr6:33765256..33768196,2	MCF-7	breast:
8	chr6:33752857..33754428-chr6:33763521..33765942,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000096395	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10456420	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456421	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189725	0.84[EUR][1000 genomes]
rs12192035	0.92[EUR][1000 genomes]
rs12192087	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193658	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195409	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198383	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199132	0.84[EUR][1000 genomes]
rs12204620	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204992	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211490	0.96[EUR][1000 genomes]
rs12211554	0.96[EUR][1000 genomes]
rs12211565	0.96[EUR][1000 genomes]
rs12215329	0.91[EUR][1000 genomes]
rs12660955	0.98[EUR][1000 genomes]
rs12662447	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200063	0.97[EUR][1000 genomes]
rs13206228	0.93[EUR][1000 genomes]
rs13207666	0.82[EUR][1000 genomes]
rs13213889	0.95[EUR][1000 genomes]
rs2274459	0.98[EUR][1000 genomes]
rs2296749	0.98[EUR][1000 genomes]
rs34139049	0.90[EUR][1000 genomes]
rs34339105	0.95[EUR][1000 genomes]
rs34460651	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34472165	0.98[EUR][1000 genomes]
rs34778247	1.00[ASN][1000 genomes]
rs34869648	0.96[EUR][1000 genomes]
rs34884883	0.98[EUR][1000 genomes]
rs35095444	0.91[ASN][1000 genomes]
rs35274562	0.90[EUR][1000 genomes]
rs35328423	0.87[EUR][1000 genomes]
rs35366046	0.90[EUR][1000 genomes]
rs35445446	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35646598	0.90[EUR][1000 genomes]
rs35721478	0.93[EUR][1000 genomes]
rs35797388	0.97[EUR][1000 genomes]
rs35964955	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36122085	0.98[EUR][1000 genomes]
rs3793080	0.95[EUR][1000 genomes]
rs3806107	0.95[EUR][1000 genomes]
rs3818532	1.00[ASN][1000 genomes]
rs66617522	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66670017	0.98[EUR][1000 genomes]
rs68168863	0.98[EUR][1000 genomes]
rs6925337	0.92[EUR][1000 genomes]
rs72880510	0.91[ASN][1000 genomes]
rs729376	0.84[EUR][1000 genomes]
rs751095	0.98[EUR][1000 genomes]
rs755239	0.98[EUR][1000 genomes]
rs877187	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv462898	chr6:33723383-33768897	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv602840	chr6:33723383-33768897	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33757600-33775800	Weak transcription	Right Atrium	heart
2	chr6:33759000-33765600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:33762000-33766800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:33762400-33767800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:33763000-33766200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:33763200-33767000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:33763400-33767200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:33763600-33765600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:33763600-33765600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:33763600-33765800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:33763600-33771600	Weak transcription	Fetal Intestine Small	intestine
12	chr6:33763800-33765800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:33764600-33766600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:33764600-33766800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:33764600-33767600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:33764800-33767200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:33765000-33765800	Enhancers	Brain Germinal Matrix	brain
18	chr6:33765000-33766000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:33765000-33766200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:33765000-33766800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:33765200-33765800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:33765200-33765800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:33765200-33766000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr6:33765200-33766000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:33765200-33766800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:33765400-33766200	Enhancers	H1 Cell Line	embryonic stem cell

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