Variant report

Variant	rs34884883
Chromosome Location	chr6:33768726-33768727
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33758412..33760501-chr6:33767524..33770306,2	MCF-7	breast:
2	chr6:33767158..33770119-chr6:33775833..33777551,2	MCF-7	breast:
3	chr6:33762823..33764594-chr6:33767158..33770034,2	K562	blood:
4	chr6:33767719..33770571-chr6:33780655..33782252,3	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10456420	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10456421	0.93[EUR][1000 genomes]
rs10947418	0.86[AFR][1000 genomes]
rs11755257	0.86[AFR][1000 genomes]
rs11758330	0.86[AFR][1000 genomes]
rs12153877	0.98[EUR][1000 genomes]
rs12189725	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12192035	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12192087	0.92[EUR][1000 genomes]
rs12193658	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12195409	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12198383	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12199132	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12200154	0.86[AFR][1000 genomes]
rs12203688	0.82[ASN][1000 genomes]
rs12204620	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12204992	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12205398	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12211490	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12211554	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12211565	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12215329	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12660955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12661400	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12662447	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13200063	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13204162	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13206228	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13207666	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13213889	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2274459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2281831	0.82[ASN][1000 genomes]
rs2296749	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34139049	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34339105	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34460651	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs34472165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34869648	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35274562	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35328423	0.88[EUR][1000 genomes]
rs35366046	0.92[EUR][1000 genomes]
rs35445446	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs35646598	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35698850	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35721478	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35797388	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35964955	0.83[EUR][1000 genomes]
rs36122085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793080	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3806107	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66617522	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs66670017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68168863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6925337	0.94[EUR][1000 genomes]
rs71565393	0.86[AFR][1000 genomes]
rs729376	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs751095	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs755239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs877187	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv462898	chr6:33723383-33768897	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv602840	chr6:33723383-33768897	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33757600-33775800	Weak transcription	Right Atrium	heart
2	chr6:33763600-33771600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:33765800-33769200	Weak transcription	Brain Germinal Matrix	brain
4	chr6:33765800-33770200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:33766000-33769200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:33766000-33770200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:33766000-33776000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:33766200-33769000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:33766600-33770000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:33766800-33768800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:33766800-33769800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:33766800-33776400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:33767800-33768800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:33767800-33769000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:33768200-33770000	Weak transcription	Osteobl	bone
16	chr6:33768400-33770600	Weak transcription	NHDF-Ad	bronchial
17	chr6:33768600-33768800	Enhancers	Fetal Brain Male	brain
18	chr6:33768600-33769400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:33768600-33769600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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