Variant report

Variant	rs66617522
Chromosome Location	chr6:33776309-33776310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33774712..33778330-chr6:33783087..33786924,3	K562	blood:
2	chr6:33759898..33762472-chr6:33773491..33776525,3	K562	blood:
3	chr6:33767158..33770119-chr6:33775833..33777551,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10456420	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456421	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947441	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10947442	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10947445	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12153877	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189725	0.80[EUR][1000 genomes]
rs12192035	0.89[EUR][1000 genomes]
rs12192087	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193658	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195409	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199132	0.80[EUR][1000 genomes]
rs12204620	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204992	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211490	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12211554	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12211565	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12215329	0.88[EUR][1000 genomes]
rs12660955	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12662447	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200063	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13203745	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13206228	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13213889	0.92[EUR][1000 genomes]
rs2274459	0.94[EUR][1000 genomes]
rs2296749	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34139049	0.87[EUR][1000 genomes]
rs34139560	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34339105	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34384116	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34460651	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34472165	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34778247	1.00[ASN][1000 genomes]
rs34869648	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs34884883	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34929964	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35095444	0.91[ASN][1000 genomes]
rs35274562	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35328423	0.83[EUR][1000 genomes]
rs35366046	0.86[EUR][1000 genomes]
rs35445446	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35646598	0.87[EUR][1000 genomes]
rs35721478	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35797388	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35964955	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36108476	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs36122085	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3793080	0.92[EUR][1000 genomes]
rs3806107	0.92[EUR][1000 genomes]
rs3818532	1.00[ASN][1000 genomes]
rs66670017	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs68168863	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6925337	0.89[EUR][1000 genomes]
rs72880510	0.91[ASN][1000 genomes]
rs72896152	0.82[AMR][1000 genomes]
rs729376	0.80[EUR][1000 genomes]
rs751095	0.94[EUR][1000 genomes]
rs755239	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs877187	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33766800-33776400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:33771400-33777000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:33773200-33777400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:33773200-33777400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:33774400-33777600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:33774800-33776400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:33774800-33776400	Bivalent Enhancer	Adipose Nuclei	Adipose
8	chr6:33775000-33776400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr6:33775000-33776400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr6:33775000-33776400	Enhancers	Left Ventricle	heart
11	chr6:33775000-33776400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
12	chr6:33775000-33776600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:33775000-33777000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:33775200-33776400	Bivalent Enhancer	Primary T cells from cord blood	blood
15	chr6:33775200-33776400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:33775200-33776400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr6:33775200-33776400	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:33775200-33776800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:33775200-33777200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr6:33775400-33777600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:33775600-33778000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:33775800-33776400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:33775800-33776400	Bivalent Enhancer	Brain Germinal Matrix	brain
24	chr6:33775800-33776400	Enhancers	Right Atrium	heart
25	chr6:33775800-33777800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
26	chr6:33775800-33777800	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr6:33775800-33778000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:33776000-33776600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:33776000-33777600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:33776000-33778000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:33776200-33776400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
32	chr6:33776200-33776400	Bivalent Enhancer	Fetal Stomach	stomach
33	chr6:33776200-33777600	Enhancers	H9 Cell Line	embryonic stem cell
34	chr6:33776200-33777600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:33776200-33777600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:33776200-33778000	Enhancers	H1 Cell Line	embryonic stem cell
37	chr6:33776200-33778000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr6:33776200-33778000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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