Variant report

Variant	rs12206315
Chromosome Location	chr6:55434049-55434050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12193675	0.83[ASN][1000 genomes]
rs72988005	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296792	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv948358	chr6:55351282-55477277	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1026411	chr6:55372845-55653498	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55424000-55434600	Weak transcription	Left Ventricle	heart
2	chr6:55432200-55434400	Enhancers	Fetal Heart	heart
3	chr6:55432200-55434400	Enhancers	Fetal Lung	lung
4	chr6:55432600-55434600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:55433000-55434200	Enhancers	Fetal Stomach	stomach
6	chr6:55433400-55434200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:55433600-55434200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:55433600-55434200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:55433600-55434200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:55433600-55434200	Enhancers	Colon Smooth Muscle	Colon
11	chr6:55433600-55434200	Enhancers	Psoas Muscle	Psoas
12	chr6:55433600-55434400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:55433800-55434200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:55434000-55434200	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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