Variant report

Variant	rs12206645
Chromosome Location	chr6:131045553-131045554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6900707	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6924281	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131043800-131046800	Weak transcription	Aorta	Aorta
2	chr6:131044600-131045800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:131044800-131045800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr6:131044800-131045800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:131044800-131045800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:131044800-131045800	Enhancers	Dnd41	blood
7	chr6:131045000-131045800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr6:131045000-131045800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:131045200-131045600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:131045200-131045800	Enhancers	Primary T cells from cord blood	blood
11	chr6:131045200-131045800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:131045200-131045800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:131045200-131046600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links