Variant report

Variant	rs6924281
Chromosome Location	chr6:131097613-131097614
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12206645	0.91[EUR][1000 genomes]
rs6900707	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6924464	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1025019	chr6:131074711-131116070	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604665	chr6:131077027-131115817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604666	chr6:131078180-131122295	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131091000-131099400	Weak transcription	Fetal Brain Male	brain
2	chr6:131096200-131098000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:131097000-131098200	Flanking Active TSS	GM12878-XiMat	blood
4	chr6:131097000-131099800	Weak transcription	HSMM	muscle
5	chr6:131097200-131099800	Weak transcription	NHDF-Ad	bronchial
6	chr6:131097400-131097800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr6:131097400-131098200	Enhancers	Primary T cells from cord blood	blood
8	chr6:131097400-131098200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:131097400-131098600	Enhancers	Dnd41	blood
10	chr6:131097600-131097800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:131097600-131097800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:131097600-131098000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr6:131097600-131098000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:131097600-131098000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:131097600-131098000	Active TSS	Liver	Liver
16	chr6:131097600-131098000	Enhancers	Small Intestine	intestine
17	chr6:131097600-131098200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:131097600-131098200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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