Variant report

Variant	rs12206670
Chromosome Location	chr6:35689793-35689794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35677116..35678875-chr6:35688132..35689859,2	K562	blood:
2	chr6:35686014..35687733-chr6:35688186..35691164,2	MCF-7	breast:
3	chr6:35655590..35657957-chr6:35689594..35691867,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000096060	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10947565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12193672	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12200498	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12203716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45586442	0.91[EUR][1000 genomes]
rs56354119	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv1028947	chr6:35670521-35714541	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
11	nsv885805	chr6:35685955-35779879	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35680800-35690200	Weak transcription	Gastric	stomach
2	chr6:35687200-35691400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:35687600-35692200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:35687600-35694000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:35688200-35690600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:35688400-35690000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:35688400-35690000	Weak transcription	Colonic Mucosa	Colon
8	chr6:35688400-35690000	Weak transcription	Stomach Mucosa	stomach
9	chr6:35688400-35690400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:35688400-35690400	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:35688400-35692200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:35688400-35693600	Weak transcription	Osteobl	bone
13	chr6:35688400-35693800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:35688400-35695000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:35688400-35695000	Enhancers	Right Ventricle	heart
16	chr6:35688600-35689800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:35688600-35689800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:35688600-35689800	Weak transcription	Left Ventricle	heart
19	chr6:35688600-35689800	Weak transcription	Right Atrium	heart
20	chr6:35688600-35690000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:35688600-35690000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:35688600-35690200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:35688600-35690200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:35688600-35690200	Enhancers	Primary B cells from cord blood	blood
25	chr6:35688600-35690600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:35688600-35690800	Enhancers	Primary B cells from peripheral blood	blood
27	chr6:35688600-35691400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:35688600-35692200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:35688600-35692800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:35688600-35693000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:35688600-35693000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:35688600-35693000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:35688600-35693200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:35688600-35693200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:35688600-35693200	Weak transcription	Fetal Kidney	kidney
36	chr6:35688600-35693200	Weak transcription	HSMMtube	muscle
37	chr6:35688600-35693400	Weak transcription	Fetal Lung	lung
38	chr6:35688600-35693600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:35688600-35693600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:35688600-35693600	Weak transcription	NHDF-Ad	bronchial
41	chr6:35688600-35693800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:35688600-35694400	Weak transcription	Fetal Brain Female	brain
43	chr6:35688600-35694800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:35688600-35695200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:35688800-35689800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:35688800-35689800	Weak transcription	Brain Angular Gyrus	brain
47	chr6:35688800-35689800	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:35688800-35689800	Weak transcription	Brain Substantia Nigra	brain
49	chr6:35688800-35689800	Weak transcription	Colon Smooth Muscle	Colon
50	chr6:35688800-35690000	Weak transcription	Primary T cells fromperipheralblood	blood

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