Variant report

Variant	rs45586442
Chromosome Location	chr6:35702217-35702218
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:35702180-35702327	HepG2	liver:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35434775..35437842-chr6:35701549..35705876,5	MCF-7	breast:
2	chr6:35435738..35438994-chr6:35698017..35702665,7	K562	blood:
3	chr6:35690475..35697423-chr6:35697728..35703210,15	MCF-7	breast:
4	chr6:35654784..35658036-chr6:35702203..35706321,5	MCF-7	breast:
5	chr6:35649127..35664209-chr6:35693738..35704622,45	K562	blood:
6	chr6:35699062..35702705-chr6:35703417..35705875,6	MCF-7	breast:
7	chr6:35655179..35657311-chr6:35699143..35705251,6	MCF-7	breast:
8	chr6:35436180..35438178-chr6:35699810..35702665,3	K562	blood:

No data

Variant related genes	Relation type
ARMC12	TF binding region
ENSG00000232909	Chromatin interaction
ENSG00000096060	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000157343	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10947565	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12193672	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12200498	0.90[EUR][1000 genomes]
rs12203716	0.91[EUR][1000 genomes]
rs12206670	0.91[EUR][1000 genomes]
rs56354119	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv1028947	chr6:35670521-35714541	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
11	nsv885805	chr6:35685955-35779879	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35700200-35703000	Enhancers	Psoas Muscle	Psoas
2	chr6:35700200-35703800	Weak transcription	Aorta	Aorta
3	chr6:35700200-35704200	Enhancers	Esophagus	oesophagus
4	chr6:35700200-35704200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr6:35700200-35706000	Enhancers	Pancreas	Pancrea
6	chr6:35700400-35704000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:35700400-35705400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:35700400-35706000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:35700600-35703800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:35700600-35703800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:35700600-35704000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:35700600-35705000	Weak transcription	Fetal Brain Male	brain
13	chr6:35700600-35705200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:35700600-35705200	Weak transcription	Fetal Kidney	kidney
15	chr6:35700600-35705400	Enhancers	Fetal Thymus	thymus
16	chr6:35700600-35705800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:35700600-35705800	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:35700600-35705800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr6:35700600-35705800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:35700600-35706000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:35700600-35706400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:35700600-35707200	Weak transcription	Fetal Intestine Small	intestine
23	chr6:35700600-35708000	Weak transcription	Fetal Brain Female	brain
24	chr6:35700800-35703000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:35700800-35703600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:35700800-35703800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:35700800-35703800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:35700800-35703800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:35700800-35704000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:35700800-35705000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:35700800-35705000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:35700800-35705200	Weak transcription	HSMMtube	muscle
33	chr6:35700800-35705600	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr6:35700800-35707400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:35700800-35710400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:35701000-35703600	Weak transcription	Primary B cells from cord blood	blood
37	chr6:35701000-35704000	Weak transcription	Fetal Stomach	stomach
38	chr6:35701000-35705000	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:35701200-35702800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:35701200-35703200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:35701200-35703400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:35701200-35703600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:35701200-35703600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr6:35701200-35703800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:35701200-35703800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:35701200-35703800	Weak transcription	Brain Anterior Caudate	brain
47	chr6:35701200-35703800	Enhancers	Thymus	Thymus
48	chr6:35701200-35704000	Weak transcription	Fetal Heart	heart
49	chr6:35701200-35704800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:35701200-35705000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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