Variant report

Variant	rs12207040
Chromosome Location	chr6:133958612-133958613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11961183	0.84[ASN][1000 genomes]
rs12209147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661401	0.85[ASN][1000 genomes]
rs13218156	0.84[ASN][1000 genomes]
rs62429273	0.85[ASN][1000 genomes]
rs6907934	0.95[ASN][1000 genomes]
rs6933141	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493673	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133944400-133962000	Weak transcription	Fetal Kidney	kidney
2	chr6:133953800-133962600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:133953800-133965800	Weak transcription	Osteobl	bone
4	chr6:133954400-133965800	Weak transcription	A549	lung
5	chr6:133955600-133959400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:133957000-133966400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:133957800-133959200	Enhancers	Colon Smooth Muscle	Colon
8	chr6:133957800-133959200	Enhancers	Rectal Smooth Muscle	rectum
9	chr6:133957800-133959400	Enhancers	Fetal Lung	lung
10	chr6:133957800-133959400	Enhancers	NHLF	lung
11	chr6:133957800-133959600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:133957800-133959600	Enhancers	Fetal Stomach	stomach
13	chr6:133958200-133959200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:133958400-133959400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:133958400-133959400	Enhancers	Adipose Nuclei	Adipose
16	chr6:133958600-133959200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:133958600-133959400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:133958600-133959600	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links