Variant report

Variant	rs6933141
Chromosome Location	chr6:133991790-133991791
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11961183	0.96[ASN][1000 genomes]
rs12207040	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209147	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12661401	0.97[ASN][1000 genomes]
rs13218156	0.96[ASN][1000 genomes]
rs62429273	0.97[ASN][1000 genomes]
rs6569892	0.84[EUR][1000 genomes]
rs6569894	0.84[EUR][1000 genomes]
rs6907934	0.88[ASN][1000 genomes]
rs7738973	0.85[EUR][1000 genomes]
rs9483599	0.81[EUR][1000 genomes]
rs9483600	0.80[EUR][1000 genomes]
rs9493685	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133988800-133995600	Weak transcription	Fetal Lung	lung
2	chr6:133990800-133991800	Weak transcription	NHDF-Ad	bronchial
3	chr6:133991600-133993200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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