Variant report
| Variant | rs12207393 |
|---|---|
| Chromosome Location | chr6:15698931-15698932 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:8 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:15696889..15699233-chr6:16129184..16131192,3 | MCF-7 | breast: | |
| 2 | chr6:15696361..15699402-chr6:16127550..16130271,4 | K562 | blood: | |
| 3 | chr6:15692594..15695303-chr6:15695960..15699366,3 | K562 | blood: | |
| 4 | chr6:15698629..15701193-chr6:15707870..15711464,3 | K562 | blood: | |
| 5 | chr6:15696979..15700313-chr6:15702500..15706211,4 | K562 | blood: | |
| 6 | chr6:15696754..15698975-chr6:15892314..15894571,2 | K562 | blood: | |
| 7 | chr6:15695993..15699402-chr6:16128189..16132296,4 | K562 | blood: | |
| 8 | chr6:15697857..15699700-chr6:16052665..16055384,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000007944 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:2)
| rs_ID | r2[population] |
|---|---|
| rs12196958 | 1.00[AMR][1000 genomes] |
| rs12207984 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428136 | chr6:15595640-15781241 | Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv2755670 | chr6:15624762-15736008 | Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | esv2607475 | chr6:15664805-15717086 | Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv2757157 | chr6:15668867-15725478 | Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | esv2759408 | chr6:15668867-15725478 | Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 6 | nsv433377 | chr6:15686225-15713759 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 7 | esv33801 | chr6:15696893-15710520 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:15698200-15699600 | ZNF genes & repeats | K562 | blood |
