Variant report

Variant	rs12207716
Chromosome Location	chr6:109806176-109806177
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109802624..109804740-chr6:109806103..109808684,3	MCF-7	breast:
2	chr6:109804505..109806373-chr6:109808766..109811459,2	K562	blood:
3	chr6:109702597..109705942-chr6:109803330..109806291,3	K562	blood:
4	chr6:109759652..109764361-chr6:109800705..109806354,8	K562	blood:
5	chr6:109700978..109703685-chr6:109804896..109807033,2	MCF-7	breast:
6	chr6:109759628..109764398-chr6:109803414..109806709,4	K562	blood:

Variant related genes	Relation type
ENSG00000223537	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000112365	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000185250	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12207503	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12209165	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12213697	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41288562	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109804400-109814200	Weak transcription	Gastric	stomach
2	chr6:109805000-109806600	Weak transcription	Lung	lung
3	chr6:109805000-109817000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:109805200-109806200	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:109805200-109806200	Enhancers	HSMM	muscle
6	chr6:109805200-109806800	Enhancers	Fetal Muscle Leg	muscle
7	chr6:109805200-109806800	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr6:109805200-109809200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:109805400-109806200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:109805400-109806200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:109805400-109806200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
12	chr6:109805400-109806600	Weak transcription	Fetal Brain Female	brain
13	chr6:109805400-109807200	Weak transcription	A549	lung
14	chr6:109805400-109807200	Weak transcription	Hela-S3	cervix
15	chr6:109805400-109807400	Weak transcription	Fetal Intestine Large	intestine
16	chr6:109805400-109807800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:109805400-109808800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:109805400-109812000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:109805600-109806200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
20	chr6:109805600-109807000	Weak transcription	Stomach Mucosa	stomach
21	chr6:109805600-109807400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:109805600-109812400	Weak transcription	Brain Angular Gyrus	brain
23	chr6:109805800-109807000	Weak transcription	Placenta	Placenta
24	chr6:109806000-109806400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:109806000-109811400	Weak transcription	Dnd41	blood

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