Variant report

Variant	rs12213697
Chromosome Location	chr6:109749383-109749384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109747081..109748999-chr6:109749255..109751645,2	MCF-7	breast:
2	chr6:109702791..109704639-chr6:109749211..109751397,2	MCF-7	breast:
3	chr6:109747606..109750215-chr6:109758639..109760987,2	K562	blood:
4	chr6:109740450..109742532-chr6:109747741..109750415,2	MCF-7	breast:
5	chr6:109744870..109747846-chr6:109748398..109750532,2	K562	blood:
6	chr6:109747606..109757389-chr6:109757828..109761794,11	K562	blood:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000185250	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12207503	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12207716	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41288562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9487075	1.00[CEU][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:109721200-109760600	Weak transcription	Fetal Brain Female	brain
3	chr6:109724400-109750400	Weak transcription	Ovary	ovary
4	chr6:109725800-109760800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:109735200-109750200	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:109735600-109750000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:109736600-109760800	Weak transcription	Brain Angular Gyrus	brain
8	chr6:109737400-109750200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:109740400-109754800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:109745600-109760800	Weak transcription	Gastric	stomach
11	chr6:109745800-109750800	Weak transcription	Left Ventricle	heart
12	chr6:109746000-109750200	Weak transcription	Adipose Nuclei	Adipose
13	chr6:109746000-109753400	Weak transcription	Pancreas	Pancrea
14	chr6:109746200-109750000	Weak transcription	Stomach Mucosa	stomach
15	chr6:109746400-109750200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:109746400-109750200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:109746400-109750600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:109746400-109750600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:109746400-109750600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:109746600-109750200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:109746600-109750400	Weak transcription	Osteobl	bone
22	chr6:109746600-109750800	Weak transcription	NHEK	skin
23	chr6:109746800-109750200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:109749000-109749600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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