Variant report

Variant	rs12207724
Chromosome Location	chr6:23699268-23699269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10456277	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10456278	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10456279	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10946615	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10946617	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11964821	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12191024	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12191124	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12191169	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12198734	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12198796	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12205517	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12209291	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12210770	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212370	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12212408	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12212513	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12214844	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202207	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13216480	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34217675	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34322312	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34444313	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34911525	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35148131	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35466548	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35750020	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35776872	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6456565	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6456570	0.89[ASN][1000 genomes]
rs6900150	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6921301	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6929007	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6930955	0.81[ASN][1000 genomes]
rs6931060	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9356874	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv462656	chr6:23629281-23721032	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv601125	chr6:23629281-23721032	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1027773	chr6:23644898-23776497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23698600-23704400	Weak transcription	Rectal Smooth Muscle	rectum

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