Variant report

Variant	rs9356874
Chromosome Location	chr6:23726819-23726820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10456277	0.82[EUR][1000 genomes]
rs10456278	0.82[EUR][1000 genomes]
rs10456279	0.81[EUR][1000 genomes]
rs10946617	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11760035	1.00[JPT][hapmap]
rs11964821	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12191024	0.83[EUR][1000 genomes]
rs12191124	0.83[EUR][1000 genomes]
rs12191169	0.83[EUR][1000 genomes]
rs12198734	0.82[EUR][1000 genomes]
rs12198796	0.81[EUR][1000 genomes]
rs12205517	0.83[EUR][1000 genomes]
rs12207724	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12209291	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12210770	0.82[EUR][1000 genomes]
rs12212370	0.82[EUR][1000 genomes]
rs12212408	0.82[EUR][1000 genomes]
rs12212513	0.82[EUR][1000 genomes]
rs12214844	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13202207	0.82[EUR][1000 genomes]
rs13216480	0.82[EUR][1000 genomes]
rs34217675	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34322312	0.92[EUR][1000 genomes]
rs34444313	0.82[EUR][1000 genomes]
rs34911525	0.82[EUR][1000 genomes]
rs35148131	0.92[EUR][1000 genomes]
rs35466548	0.82[EUR][1000 genomes]
rs35750020	0.81[EUR][1000 genomes]
rs35776872	0.82[EUR][1000 genomes]
rs6456565	0.83[EUR][1000 genomes]
rs6456570	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6900150	0.81[EUR][1000 genomes]
rs6921301	0.83[EUR][1000 genomes]
rs6929007	0.83[EUR][1000 genomes]
rs6930955	0.82[EUR][1000 genomes]
rs6931060	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1027773	chr6:23644898-23776497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv14730	chr6:23711548-23746486	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23726800-23730000	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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