Variant report

Variant	rs12208744
Chromosome Location	chr6:37087974-37087975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37087210..37090085-chr6:37092533..37095828,3	K562	blood:
2	chr6:37078466..37081353-chr6:37086444..37088637,2	K562	blood:
3	chr6:37070665..37072516-chr6:37086357..37088909,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10947657	1.00[CEU][hapmap]
rs13200300	1.00[AFR][1000 genomes]
rs13202159	1.00[AFR][1000 genomes]
rs13211079	1.00[AFR][1000 genomes]
rs13217078	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37073600-37090600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:37075200-37091000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:37079000-37092400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:37079200-37092600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:37083400-37090400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:37083400-37090800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:37084600-37093400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:37084800-37089200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:37084800-37091200	Weak transcription	K562	blood
10	chr6:37084800-37093400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:37085400-37089200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:37085400-37089200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:37085400-37090800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:37085400-37092000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:37085600-37089200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:37085800-37089000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:37086000-37089400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:37086400-37088600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:37087000-37088000	Enhancers	GM12878-XiMat	blood
20	chr6:37087000-37088000	Enhancers	Hela-S3	cervix
21	chr6:37087000-37088200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:37087000-37093600	Enhancers	HepG2	liver
23	chr6:37087400-37088000	Enhancers	Placenta	Placenta
24	chr6:37087600-37088000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:37087800-37088000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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