Variant report

Variant	rs13211079
Chromosome Location	chr6:36977349-36977350
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36977300..36979509-chr6:36984947..36986503,2	K562	blood:
2	chr6:36952318..36954774-chr6:36975730..36977453,2	K562	blood:
3	chr6:36960761..36964631-chr6:36974795..36978853,3	MCF-7	breast:
4	chr6:36952074..36956895-chr6:36967839..36978010,11	MCF-7	breast:
5	chr6:36976679..36978826-chr6:37225784..37227399,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGD2-1	chr6:36976610-36977807	NONHSAT112246

Variant related genes	Relation type
ENSG00000172738	Chromatin interaction
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12208744	1.00[AFR][1000 genomes]
rs13200300	1.00[AFR][1000 genomes]
rs13202159	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13217078	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv602952	chr6:36951210-36978745	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv885816	chr6:36965099-36999682	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36974200-36987000	Weak transcription	Right Atrium	heart
2	chr6:36974400-36980800	Weak transcription	Lung	lung
3	chr6:36974800-36979400	Weak transcription	Pancreas	Pancrea
4	chr6:36974800-36984600	Weak transcription	Fetal Thymus	thymus
5	chr6:36974800-36985000	Weak transcription	Brain Substantia Nigra	brain
6	chr6:36975000-36985800	Weak transcription	Fetal Intestine Small	intestine
7	chr6:36975400-36979600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:36975400-36985400	Weak transcription	Right Ventricle	heart
9	chr6:36975400-36988600	Weak transcription	Gastric	stomach
10	chr6:36975600-36985800	Weak transcription	Stomach Mucosa	stomach
11	chr6:36975600-36988200	Weak transcription	Esophagus	oesophagus
12	chr6:36975600-36989600	Weak transcription	Thymus	Thymus
13	chr6:36976000-36977400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:36976000-36985200	Weak transcription	Placenta	Placenta
15	chr6:36976000-36986200	Weak transcription	Colonic Mucosa	Colon
16	chr6:36976200-36977400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:36976200-36979600	Genic enhancers	Primary B cells from peripheral blood	blood
18	chr6:36976200-36983200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:36976200-36984800	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:36976200-36985800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:36976200-36985800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:36976400-36977400	Enhancers	Adipose Nuclei	Adipose
23	chr6:36976600-36977400	Enhancers	Liver	Liver
24	chr6:36976600-36977400	Genic enhancers	Spleen	Spleen
25	chr6:36976600-36977400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
26	chr6:36976600-36978000	Genic enhancers	Primary B cells from cord blood	blood
27	chr6:36976800-36977400	Genic enhancers	GM12878-XiMat	blood
28	chr6:36977000-36978800	Genic enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:36977000-36981200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:36977000-36985800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:36977000-36986200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:36977200-36977400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr6:36977200-36977400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:36977200-36978000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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