Variant report

Variant	nsv602952
Chromosome Location	chr6:36951210-36978745
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:36953849-36954297	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:36953882-36954358	K562	blood:	n/a	n/a
3	ARID3A	chr6:36952751-36952758	HepG2	liver:	n/a	n/a
4	ATF1	chr6:36953805-36954407	K562	blood:	n/a	n/a
5	ATF2	chr6:36975311-36976028	GM12878	blood:	n/a	n/a
6	ATF2	chr6:36972239-36972765	GM12878	blood:	n/a	n/a
7	ATF2	chr6:36953752-36954392	GM12878	blood:	n/a	n/a
8	ATF2	chr6:36952366-36953109	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF3	chr6:36953708-36954212	GM12878	blood:	n/a	chr6:36954012-36954021 chr6:36953976-36953996 chr6:36953976-36953985
10	ATF3	chr6:36953764-36954186	HepG2	liver:	n/a	chr6:36953976-36953996 chr6:36953976-36953985 chr6:36954012-36954021
11	ATF3	chr6:36953708-36954161	H1-hESC	embryonic stem cell:	n/a	chr6:36954012-36954021 chr6:36953976-36953996 chr6:36953976-36953985
12	ATF3	chr6:36953783-36954204	K562	blood:	n/a	chr6:36954012-36954021 chr6:36953976-36953996 chr6:36953976-36953985
13	ATF3	chr6:36953716-36954157	K562	blood:	n/a	chr6:36954012-36954021 chr6:36953976-36953996 chr6:36953976-36953985
14	ATF3	chr6:36953729-36954147	H1-hESC	embryonic stem cell:	n/a	chr6:36954012-36954021 chr6:36953976-36953996 chr6:36953976-36953985
15	ATF3	chr6:36954222-36954583	K562	blood:	n/a	chr6:36954234-36954243
16	ATF3	chr6:36953803-36954026	GM12878	blood:	n/a	chr6:36954012-36954021 chr6:36953976-36953996 chr6:36953976-36953985
17	ATF3	chr6:36953709-36954310	HepG2	liver:	n/a	chr6:36954012-36954021 chr6:36953976-36953996 chr6:36953976-36953985 chr6:36954234-36954243
18	ATF3	chr6:36953834-36954138	K562	blood:	n/a	chr6:36954012-36954021 chr6:36953976-36953996 chr6:36953976-36953985
19	BACH1	chr6:36953937-36954469	H1-hESC	embryonic stem cell:	n/a	n/a
20	BCLAF1	chr6:36953567-36954167	GM12878	blood:	n/a	chr6:36954128-36954141 chr6:36954152-36954165 chr6:36954016-36954029
21	BCLAF1	chr6:36973184-36973691	GM12878	blood:	n/a	n/a
22	BCLAF1	chr6:36953697-36954586	K562	blood:	n/a	chr6:36954128-36954141 chr6:36954177-36954185 chr6:36954182-36954195 chr6:36954152-36954165 chr6:36954188-36954201 chr6:36954016-36954029
23	BHLHE40	chr6:36973273-36973560	GM12878	blood:	n/a	n/a
24	BHLHE40	chr6:36953686-36955044	K562	blood:	n/a	chr6:36954127-36954143 chr6:36953970-36953991 chr6:36953977-36953986 chr6:36953976-36953985 chr6:36954542-36954558 chr6:36954191-36954207 chr6:36953974-36953987 chr6:36953976-36953985 chr6:36953975-36953984
25	BHLHE40	chr6:36975123-36975848	GM12878	blood:	n/a	n/a
26	BHLHE40	chr6:36953810-36954036	HepG2	liver:	n/a	chr6:36953970-36953991 chr6:36953977-36953986 chr6:36953976-36953985 chr6:36953974-36953987 chr6:36953976-36953985 chr6:36953975-36953984
27	BHLHE40	chr6:36967394-36967480	K562	blood:	n/a	n/a
28	BHLHE40	chr6:36971830-36972133	GM12878	blood:	n/a	n/a
29	BHLHE40	chr6:36953726-36954528	GM12878	blood:	n/a	chr6:36954127-36954143 chr6:36953970-36953991 chr6:36953977-36953986 chr6:36953976-36953985 chr6:36954191-36954207 chr6:36953974-36953987 chr6:36953976-36953985 chr6:36953975-36953984
30	BHLHE40	chr6:36972439-36972669	GM12878	blood:	n/a	n/a
31	BHLHE40	chr6:36952725-36953145	GM12878	blood:	n/a	n/a
32	BHLHE40	chr6:36953805-36954235	A549	lung:	n/a	chr6:36954127-36954143 chr6:36953970-36953991 chr6:36953977-36953986 chr6:36953976-36953985 chr6:36954191-36954207 chr6:36953974-36953987 chr6:36953976-36953985 chr6:36953975-36953984
33	BHLHE40	chr6:36954760-36954955	GM12878	blood:	n/a	n/a
34	BHLHE40	chr6:36953594-36955050	HepG2	liver:	n/a	chr6:36954127-36954143 chr6:36953970-36953991 chr6:36953977-36953986 chr6:36953976-36953985 chr6:36954542-36954558 chr6:36954191-36954207 chr6:36953974-36953987 chr6:36953976-36953985 chr6:36953975-36953984
35	BHLHE40	chr6:36973353-36973682	K562	blood:	n/a	n/a
36	BRCA1	chr6:36972329-36972426	GM12878	blood:	n/a	n/a
37	BRCA1	chr6:36953704-36954301	GM12878	blood:	n/a	n/a
38	BRCA1	chr6:36953873-36954230	H1-hESC	embryonic stem cell:	n/a	n/a
39	BRCA1	chr6:36973517-36973609	GM12878	blood:	n/a	n/a
40	BRCA1	chr6:36953874-36954406	Hela-S3	cervix:	n/a	n/a
41	BRCA1	chr6:36953847-36954512	HepG2	liver:	n/a	n/a
42	CBX3	chr6:36973277-36973639	K562	blood:	n/a	n/a
43	CBX3	chr6:36953534-36955213	K562	blood:	n/a	n/a
44	CCNT2	chr6:36953629-36954539	K562	blood:	n/a	chr6:36954234-36954243 chr6:36954419-36954428 chr6:36954018-36954027 chr6:36954012-36954021
45	CEBPB	chr6:36974926-36975222	A549	lung:	n/a	n/a
46	CEBPB	chr6:36954044-36954119	H1-hESC	embryonic stem cell:	n/a	n/a
47	CEBPB	chr6:36977688-36977819	K562	blood:	n/a	n/a
48	CEBPB	chr6:36974813-36975114	IMR90	lung:	n/a	n/a
49	CEBPB	chr6:36966251-36966471	HepG2	liver:	n/a	n/a
50	CEBPB	chr6:36964853-36965050	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:36972027-36972077	HIPEpiC	eye:	n/a
2	chr6:36972027-36972077	HIPEpiC	eye:	n/a
3	chr6:36966223-36966273	BJ	skin:	n/a
4	chr6:36954138-36954188	HepG2	liver:	n/a
5	chr6:36973448-36973498	GM12892	blood:	n/a
6	chr6:36972163-36972213	Hela-S3	cervix:	n/a
7	chr6:36953962-36954012	PFSK-1	brain:	n/a
8	chr6:36954695-36954745	HRPEpiC	eye:	n/a
9	chr6:36954138-36954188	A549	lung:	n/a
10	chr6:36972163-36972213	SKMC	muscle:	n/a
11	chr6:36972027-36972077	HL-60	blood:	n/a
12	chr6:36954249-36954299	ovcar-3	ovarian:	n/a
13	chr6:36973448-36973498	A549	lung:	n/a
14	chr6:36954195-36954245	HCT-116	colon:	n/a
15	chr6:36972127-36972177	NB4	blood:	n/a
16	chr6:36954195-36954245	Hepatocyte	liver:	n/a
17	chr6:36972127-36972177	AG10803	skin:	n/a
18	chr6:36966223-36966273	ovcar-3	ovarian:	n/a
19	chr6:36953962-36954012	U87	brain:	n/a
20	chr6:36954138-36954188	HAEpiC	amniotic membrane:	n/a
21	chr6:36972027-36972077	NHBE	bronchial:	n/a
22	chr6:36972127-36972177	PANC-1	pancreas:	n/a
23	chr6:36954170-36954220	SKMC	muscle:	n/a
24	chr6:36973448-36973498	HL-60	blood:	n/a
25	chr6:36954695-36954745	NB4	blood:	n/a
26	chr6:36972027-36972077	SK-N-SH	brain:	n/a
27	chr6:36956891-36956941	PANC-1	pancreas:	n/a
28	chr6:36954249-36954299	H1-hESC	embryonic stem cell:	embryo
29	chr6:36972027-36972077	K562	blood:	n/a
30	chr6:36956891-36956941	GM12892	blood:	n/a
31	chr6:36972027-36972077	HRCEpiC	kidney:	n/a
32	chr6:36954138-36954188	Caco-2	colon:	n/a
33	chr6:36972163-36972213	HCT-116	colon:	n/a
34	chr6:36972127-36972177	AG09319	gingival:	n/a
35	chr6:36953962-36954012	HCPEpiC	choroid plexus:	n/a
36	chr6:36954133-36954183	SK-N-SH_RA	brain:	n/a
37	chr6:36954249-36954299	BJ	skin:	n/a
38	chr6:36973518-36973568	AG04449	skin:	fetal
39	chr6:36954170-36954220	PrEC	prostate:	n/a
40	chr6:36953962-36954012	HCT-116	colon:	n/a
41	chr6:36966223-36966273	GM12892	blood:	n/a
42	chr6:36966223-36966273	PFSK-1	brain:	n/a
43	chr6:36954133-36954183	BJ	skin:	n/a
44	chr6:36972027-36972077	PrEC	prostate:	n/a
45	chr6:36954695-36954745	ECC-1	luminal epithelium:	n/a
46	chr6:36972127-36972177	HL-60	blood:	n/a
47	chr6:36954170-36954220	ECC-1	luminal epithelium:	n/a
48	chr6:36973518-36973568	HMEC	breast:	n/a
49	chr6:36954138-36954188	HUVEC	blood vessel:	n/a
50	chr6:36953962-36954012	NB4	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:36951556..36954050-chr6:36967032..36970466,4	K562	blood:
2	chr6:36960761..36964631-chr6:36974795..36978853,3	MCF-7	breast:
3	chr6:36952379..36955102-chr6:36965979..36971792,7	MCF-7	breast:
4	chr4:15003883..15004454-chr6:36953903..36954495,2	Hela-S3	cervix:
5	chr6:36952261..36954341-chr6:37137585..37140214,3	K562	blood:
6	chr6:36954231..36957100-chr6:36969352..36972549,3	K562	blood:
7	chr6:36977300..36979509-chr6:36984947..36986503,2	K562	blood:
8	chr6:36950922..36953739-chr6:37176914..37178749,2	MCF-7	breast:
9	chr6:36953605..36955180-chr6:37399250..37401093,2	K562	blood:
10	chr6:36953616..36955180-chr6:36955668..36958158,2	K562	blood:
11	chr6:36905749..36908241-chr6:36957017..36958838,2	K562	blood:
12	chr6:36967024..36973771-chr6:36979699..36986633,7	K562	blood:
13	chr10:74033541..74034167-chr6:36953934..36954557,2	Hela-S3	cervix:
14	chr6:36889896..36892689-chr6:36954303..36956712,2	MCF-7	breast:
15	chr6:36949230..36952224-chr6:37136925..37139369,2	K562	blood:
16	chr6:36976679..36978826-chr6:37225784..37227399,2	K562	blood:
17	chr19:55918204..55919099-chr6:36954269..36955029,2	Hela-S3	cervix:
18	chr6:36853647..36856578-chr6:36948651..36952350,3	K562	blood:
19	chr6:36937337..36939387-chr6:36947202..36951298,3	MCF-7	breast:
20	chr6:36952318..36954774-chr6:36975730..36977453,2	K562	blood:
21	chr6:36911927..36913902-chr6:36952339..36954357,2	MCF-7	breast:
22	chr6:36949522..36951437-chr6:36961267..36963379,2	K562	blood:
23	chr22:38203892..38204538-chr6:36953541..36954473,2	Hela-S3	cervix:
24	chr6:36561584..36563964-chr6:36951421..36953213,2	MCF-7	breast:
25	chr12:110887592..110888194-chr6:36953724..36954482,2	NB4	blood:
26	chr6:36852138..36856054-chr6:36953606..36956862,5	K562	blood:
27	chr6:36952367..36954774-chr6:36974334..36977230,2	K562	blood:
28	chr6:36949522..36951437-chr6:36961267..36963379,2	K562	blood:
29	chr6:36952074..36956895-chr6:36967839..36978010,11	MCF-7	breast:
30	chr6:36951113..36952947-chr6:36995288..36997269,2	K562	blood:
31	chr6:36851693..36853649-chr6:36966892..36968803,2	MCF-7	breast:
32	chr6:36936791..36939065-chr6:36954271..36955828,2	MCF-7	breast:
33	chr6:36954231..36957100-chr6:36969352..36972549,3	K562	blood:
34	chr6:36964178..36967540-chr6:36970147..36973518,3	K562	blood:
35	chr6:36960761..36964631-chr6:36974795..36978853,3	MCF-7	breast:
36	chr6:36959704..36962585-chr6:36968931..36971107,3	K562	blood:
37	chr1:181057607..181058228-chr6:36953385..36954212,2	NB4	blood:
38	chr6:36962998..36965678-chr6:36969207..36971647,3	K562	blood:
39	chr6:36951360..36957548-chr6:36964706..36970928,10	K562	blood:
40	chr6:36952431..36954730-chr6:36980411..36983158,3	MCF-7	breast:
41	chr6:36966223..36968273-chr6:36968808..36971122,3	K562	blood:
42	chr6:36970572..36972473-chr6:36980077..36981597,2	MCF-7	breast:
43	chr6:36571817..36573634-chr6:36968977..36971484,2	K562	blood:
44	chr12:65996353..65997155-chr6:36953845..36954457,2	HCT-116	colon:
45	chr6:36852677..36854280-chr6:36961747..36964273,2	K562	blood:
46	chr6:36934908..36939247-chr6:36952489..36955593,6	MCF-7	breast:
47	chr6:36852278..36855515-chr6:36952430..36957026,4	MCF-7	breast:
48	chr6:36886112..36887958-chr6:36978149..36979897,2	MCF-7	breast:
49	chr6:36724390..36726745-chr6:36953555..36956553,2	K562	blood:
50	chr6:36953075..36956165-chr6:36961962..36964625,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGD2-1	chr6:36976610-36977807	NONHSAT112246
2	lnc-FGD2-1	chr6:36973422-36973661	NONHSAT112246

Variant related genes	Relation type
MTCH1	TF binding region
FGD2	TF binding region
MTCH1	CpG island
FGD2	CpG island
ENSG00000146192	chromatin interactions
ENSG00000162783	chromatin interactions
ENSG00000168209	chromatin interactions
ENSG00000165030	chromatin interactions
ENSG00000111229	chromatin interactions
ENSG00000137168	chromatin interactions
ENSG00000172738	chromatin interactions
ENSG00000137449	chromatin interactions
ENSG00000164530	chromatin interactions
ENSG00000137409	chromatin interactions
ENSG00000183011	chromatin interactions
ENSG00000108106	chromatin interactions
ENSG00000256268	chromatin interactions
ENSG00000100116	chromatin interactions
ENSG00000137193	chromatin interactions
ENSG00000232598	chromatin interactions
ENSG00000137200	chromatin interactions
ENSG00000198663	chromatin interactions
ENSG00000161013	chromatin interactions
ENSG00000124772	chromatin interactions
ENSG00000112081	chromatin interactions
ENSG00000182224	chromatin interactions
ENSG00000161011	chromatin interactions

Extended variants
information (count: 1272 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:1272 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs726819	chr6:36951210-36951211	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs145888295	chr6:36951216-36951217	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs528786179	chr6:36951267-36951268	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs148504720	chr6:36951354-36951355	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs567142458	chr6:36951360-36951361	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs529750224	chr6:36951366-36951367	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs549883777	chr6:36951367-36951368	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs569792482	chr6:36951376-36951377	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs74639942	chr6:36951386-36951387	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs558485409	chr6:36951412-36951413	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs115042529	chr6:36951472-36951473	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs534602179	chr6:36951473-36951474	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs554879631	chr6:36951496-36951497	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs574718038	chr6:36951525-36951526	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs3997730	chr6:36951539-36951540	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs3997731	chr6:36951540-36951541	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs543433936	chr6:36951611-36951612	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs557001208	chr6:36951630-36951631	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs528990245	chr6:36951675-36951676	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs79531340	chr6:36951707-36951708	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs568759606	chr6:36951805-36951806	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs147685496	chr6:36951830-36951831	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs76821154	chr6:36951832-36951833	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs189468192	chr6:36951836-36951837	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs542143449	chr6:36951854-36951855	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs3822973	chr6:36951865-36951866	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs529688827	chr6:36951909-36951910	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs73733425	chr6:36951953-36951954	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs112588184	chr6:36951982-36951983	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
30	rs71722718	chr6:36951983-36951984	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
31	rs11280615	chr6:36951985-36951986	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
32	rs199794135	chr6:36951986-36951987	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
33	rs79421282	chr6:36951992-36951993	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
34	rs369773491	chr6:36952083-36952084	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
35	rs146972520	chr6:36952087-36952088	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
36	rs113102907	chr6:36952102-36952103	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
37	rs565718820	chr6:36952112-36952113	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
38	rs147615168	chr6:36952135-36952136	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
39	rs554539153	chr6:36952172-36952173	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
40	rs3822972	chr6:36952226-36952227	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs180716590	chr6:36952245-36952246	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
42	rs556938035	chr6:36952279-36952280	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
43	rs114178996	chr6:36952294-36952295	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
44	rs62406529	chr6:36952342-36952343	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs185752794	chr6:36952350-36952351	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
46	rs573337131	chr6:36952361-36952362	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
47	rs74802303	chr6:36952368-36952369	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
48	rs370082341	chr6:36952392-36952393	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
49	rs3778020	chr6:36952393-36952394	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
50	rs140854584	chr6:36952419-36952420	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Lung cancer	19153074	CNVD
Ovarian cancer	21720365	CNVD
Melanoma	21693616	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	21062444	CNVD
Breast cancer	16397240	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Osteosarcoma	21197465	CNVD
Gastric cancer	24379144	CNVD
Neuroblastoma	18923191	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1058 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36932400-36951800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:36934000-36951600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:36945400-36951400	Weak transcription	Fetal Kidney	kidney
4	chr6:36946200-36952000	Weak transcription	A549	lung
5	chr6:36946400-36951600	Weak transcription	HSMMtube	muscle
6	chr6:36946400-36951800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:36946800-36951800	Enhancers	Brain Angular Gyrus	brain
8	chr6:36946800-36951800	Genic enhancers	Brain Anterior Caudate	brain
9	chr6:36947000-36951400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
10	chr6:36947200-36952000	Enhancers	Colon Smooth Muscle	Colon
11	chr6:36947600-36951600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:36947600-36951800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:36948800-36951400	Weak transcription	NHEK	skin
14	chr6:36949200-36951800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:36949200-36951800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:36949200-36952400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:36949400-36951400	Weak transcription	Fetal Brain Male	brain
18	chr6:36949400-36951600	Weak transcription	Psoas Muscle	Psoas
19	chr6:36949400-36951800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:36949400-36951800	Enhancers	Brain Cingulate Gyrus	brain
21	chr6:36949400-36951800	Weak transcription	Placenta	Placenta
22	chr6:36949400-36952400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:36949600-36951400	Weak transcription	Gastric	stomach
24	chr6:36949600-36951600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:36949600-36952200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr6:36949800-36951400	Weak transcription	Left Ventricle	heart
27	chr6:36949800-36951600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:36949800-36951600	Weak transcription	Brain Germinal Matrix	brain
29	chr6:36949800-36951600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:36949800-36951800	Enhancers	Primary T cells from cord blood	blood
31	chr6:36949800-36952400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr6:36950000-36951600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:36950000-36951600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:36950000-36951800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:36950000-36951800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:36950200-36952200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr6:36950200-36952200	Enhancers	Right Atrium	heart
38	chr6:36950200-36952400	Enhancers	Pancreas	Pancrea
39	chr6:36950400-36951800	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr6:36950400-36951800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:36950400-36951800	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr6:36950400-36952000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:36950400-36952200	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr6:36950400-36952600	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr6:36950400-36952600	Enhancers	Stomach Mucosa	stomach
46	chr6:36950600-36951400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:36950600-36951400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:36950600-36951400	Enhancers	Stomach Smooth Muscle	stomach
49	chr6:36950600-36951400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
50	chr6:36950600-36951400	Genic enhancers	NHLF	lung

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