Variant report

Variant	rs180716590
Chromosome Location	chr6:36952245-36952246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36930754..36936310-chr6:36950773..36956274,7	MCF-7	breast:
2	chr6:36952074..36956895-chr6:36967839..36978010,11	MCF-7	breast:
3	chr6:36561584..36563964-chr6:36951421..36953213,2	MCF-7	breast:
4	chr6:36950922..36953739-chr6:37176914..37178749,2	MCF-7	breast:
5	chr6:36951113..36952947-chr6:36995288..36997269,2	K562	blood:
6	chr6:36646638..36649501-chr6:36950264..36953112,2	MCF-7	breast:
7	chr6:36853647..36856578-chr6:36948651..36952350,3	K562	blood:
8	chr6:36838369..36843263-chr6:36951921..36955568,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000146192	Chromatin interaction
ENSG00000198663	Chromatin interaction
ENSG00000164530	Chromatin interaction
ENSG00000137168	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv5263	chr6:36941625-36972109	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
5	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv602952	chr6:36951210-36978745	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv19906	chr6:36951876-36955062	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36949200-36952400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:36949400-36952400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:36949800-36952400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:36950200-36952400	Enhancers	Pancreas	Pancrea
5	chr6:36950400-36952600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:36950400-36952600	Enhancers	Stomach Mucosa	stomach
7	chr6:36950600-36952400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:36950600-36952400	Enhancers	Liver	Liver
9	chr6:36950600-36952600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:36950800-36952400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:36950800-36952400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:36950800-36952400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:36950800-36952400	Genic enhancers	Fetal Thymus	thymus
14	chr6:36950800-36952400	Enhancers	Ovary	ovary
15	chr6:36950800-36952600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:36950800-36952600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:36950800-36952600	Enhancers	Spleen	Spleen
18	chr6:36951000-36952400	Enhancers	Colonic Mucosa	Colon
19	chr6:36951000-36952600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:36951000-36952600	Enhancers	Small Intestine	intestine
21	chr6:36951000-36952800	Flanking Active TSS	HUVEC	blood vessel
22	chr6:36951200-36952600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr6:36951200-36952600	Transcr. at gene 5' and 3'	Dnd41	blood
24	chr6:36951200-36952800	Flanking Active TSS	Right Ventricle	heart
25	chr6:36951400-36952400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:36951400-36952400	Enhancers	Fetal Brain Male	brain
27	chr6:36951400-36952400	Enhancers	Fetal Kidney	kidney
28	chr6:36951400-36952400	Enhancers	Gastric	stomach
29	chr6:36951400-36952400	Enhancers	Left Ventricle	heart
30	chr6:36951400-36952400	Enhancers	Thymus	Thymus
31	chr6:36951400-36952600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr6:36951400-36952600	Flanking Active TSS	GM12878-XiMat	blood
33	chr6:36951400-36952600	Flanking Active TSS	NHLF	lung
34	chr6:36951400-36953400	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr6:36951600-36952400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:36951600-36952400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:36951600-36952400	Enhancers	Aorta	Aorta
38	chr6:36951600-36952400	Enhancers	Brain Germinal Matrix	brain
39	chr6:36951600-36952400	Enhancers	Fetal Intestine Large	intestine
40	chr6:36951600-36952400	Enhancers	Fetal Stomach	stomach
41	chr6:36951600-36952400	Enhancers	Psoas Muscle	Psoas
42	chr6:36951600-36952400	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr6:36951600-36952400	Enhancers	HSMMtube	muscle
44	chr6:36951600-36952600	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr6:36951600-36952800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
46	chr6:36951600-36953000	Flanking Active TSS	Hela-S3	cervix
47	chr6:36951600-36953400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:36951800-36952400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:36951800-36952400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:36951800-36952400	Enhancers	Esophagus	oesophagus

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