Variant report

Variant	rs528990245
Chromosome Location	chr6:36951675-36951676
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36930754..36936310-chr6:36950773..36956274,7	MCF-7	breast:
2	chr6:36561584..36563964-chr6:36951421..36953213,2	MCF-7	breast:
3	chr6:36950922..36953739-chr6:37176914..37178749,2	MCF-7	breast:
4	chr6:36951113..36952947-chr6:36995288..36997269,2	K562	blood:
5	chr6:36646638..36649501-chr6:36950264..36953112,2	MCF-7	breast:
6	chr6:36949230..36952224-chr6:37136925..37139369,2	K562	blood:
7	chr6:36853647..36856578-chr6:36948651..36952350,3	K562	blood:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000164530	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv5263	chr6:36941625-36972109	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
5	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv602952	chr6:36951210-36978745	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv3384855	chr6:36951670-36952151	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36932400-36951800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:36946200-36952000	Weak transcription	A549	lung
3	chr6:36946400-36951800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:36946800-36951800	Enhancers	Brain Angular Gyrus	brain
5	chr6:36946800-36951800	Genic enhancers	Brain Anterior Caudate	brain
6	chr6:36947200-36952000	Enhancers	Colon Smooth Muscle	Colon
7	chr6:36947600-36951800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:36949200-36951800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:36949200-36951800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:36949200-36952400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:36949400-36951800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:36949400-36951800	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:36949400-36951800	Weak transcription	Placenta	Placenta
14	chr6:36949400-36952400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:36949600-36952200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr6:36949800-36951800	Enhancers	Primary T cells from cord blood	blood
17	chr6:36949800-36952400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:36950000-36951800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:36950000-36951800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:36950200-36952200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:36950200-36952200	Enhancers	Right Atrium	heart
22	chr6:36950200-36952400	Enhancers	Pancreas	Pancrea
23	chr6:36950400-36951800	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr6:36950400-36951800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:36950400-36951800	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr6:36950400-36952000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:36950400-36952200	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr6:36950400-36952600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:36950400-36952600	Enhancers	Stomach Mucosa	stomach
30	chr6:36950600-36951800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:36950600-36951800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:36950600-36951800	Genic enhancers	Primary B cells from peripheral blood	blood
33	chr6:36950600-36951800	Enhancers	Brain Hippocampus Middle	brain
34	chr6:36950600-36951800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr6:36950600-36951800	Enhancers	Osteobl	bone
36	chr6:36950600-36952000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr6:36950600-36952000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:36950600-36952000	Enhancers	Adipose Nuclei	Adipose
39	chr6:36950600-36952000	Enhancers	Brain Substantia Nigra	brain
40	chr6:36950600-36952200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr6:36950600-36952400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:36950600-36952400	Enhancers	Liver	Liver
43	chr6:36950600-36952600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:36950800-36951800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:36950800-36951800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:36950800-36951800	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr6:36950800-36951800	Enhancers	Primary B cells from cord blood	blood
48	chr6:36950800-36951800	Weak transcription	Esophagus	oesophagus
49	chr6:36950800-36951800	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr6:36950800-36951800	Weak transcription	Lung	lung

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