Variant report

Variant	rs12208802
Chromosome Location	chr6:164461976-164461977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164460567..164462817-chr6:164464682..164466683,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10455794	0.96[ASN][1000 genomes]
rs10755598	0.96[ASN][1000 genomes]
rs10806788	0.96[ASN][1000 genomes]
rs10806789	0.96[ASN][1000 genomes]
rs10945948	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10945949	0.96[ASN][1000 genomes]
rs10945950	0.96[ASN][1000 genomes]
rs10945951	0.82[ASN][1000 genomes]
rs12055516	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12055870	1.00[ASW][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[ASN][1000 genomes]
rs12175904	0.98[ASN][1000 genomes]
rs12200189	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204824	0.98[ASN][1000 genomes]
rs12208775	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216473	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216523	0.98[ASN][1000 genomes]
rs12527242	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12527246	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12527249	0.94[ASN][1000 genomes]
rs12530262	0.96[ASN][1000 genomes]
rs13212664	0.96[ASN][1000 genomes]
rs1436856	0.96[ASN][1000 genomes]
rs1436857	0.96[ASN][1000 genomes]
rs1436858	0.96[ASN][1000 genomes]
rs1436859	0.96[ASN][1000 genomes]
rs1436860	0.96[ASN][1000 genomes]
rs1898308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992103	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs205996	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs206688	0.98[ASN][1000 genomes]
rs34312142	0.98[ASN][1000 genomes]
rs35317099	0.96[ASN][1000 genomes]
rs35965781	0.83[ASN][1000 genomes]
rs366572	0.98[ASN][1000 genomes]
rs368303	0.96[ASN][1000 genomes]
rs369635	0.98[ASN][1000 genomes]
rs377662	0.98[ASN][1000 genomes]
rs379046	0.98[ASN][1000 genomes]
rs379084	0.98[ASN][1000 genomes]
rs380640	0.98[ASN][1000 genomes]
rs383861	0.98[ASN][1000 genomes]
rs384090	0.98[ASN][1000 genomes]
rs386112	0.98[ASN][1000 genomes]
rs390097	0.98[ASN][1000 genomes]
rs390662	0.98[ASN][1000 genomes]
rs392649	0.98[ASN][1000 genomes]
rs396207	0.96[ASN][1000 genomes]
rs407411	0.97[ASN][1000 genomes]
rs411505	0.98[ASN][1000 genomes]
rs412544	0.98[ASN][1000 genomes]
rs412553	0.98[ASN][1000 genomes]
rs414708	0.98[ASN][1000 genomes]
rs418309	0.98[ASN][1000 genomes]
rs418319	0.98[ASN][1000 genomes]
rs419927	0.98[ASN][1000 genomes]
rs422371	0.98[ASN][1000 genomes]
rs422805	0.98[ASN][1000 genomes]
rs429361	0.98[ASN][1000 genomes]
rs445855	0.96[ASN][1000 genomes]
rs71569438	0.94[ASN][1000 genomes]
rs71569439	0.94[ASN][1000 genomes]
rs9346989	0.98[ASN][1000 genomes]
rs9346990	0.98[ASN][1000 genomes]
rs9346991	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347815	0.97[ASN][1000 genomes]
rs9347816	0.98[ASN][1000 genomes]
rs9347817	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9355456	0.83[ASN][1000 genomes]
rs9355457	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9355459	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9364714	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9364715	0.98[ASN][1000 genomes]
rs9365649	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9365652	0.96[ASN][1000 genomes]
rs9365656	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1019703	chr6:164424683-164488780	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164446400-164462800	Weak transcription	Right Atrium	heart
2	chr6:164461200-164463600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:164461200-164464800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:164461200-164464800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:164461600-164462800	Weak transcription	K562	blood

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