Variant report

Variant	rs205996
Chromosome Location	chr6:164453653-164453654
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10455794	0.90[ASN][1000 genomes]
rs10755598	0.90[ASN][1000 genomes]
rs10806788	0.90[ASN][1000 genomes]
rs10806789	0.90[ASN][1000 genomes]
rs10945948	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10945949	0.90[ASN][1000 genomes]
rs10945950	0.90[ASN][1000 genomes]
rs12055516	0.88[ASN][1000 genomes]
rs12055870	0.88[ASN][1000 genomes]
rs12175904	0.92[ASN][1000 genomes]
rs12200189	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12204824	0.94[ASN][1000 genomes]
rs12208775	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12208802	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12216473	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12216523	0.92[ASN][1000 genomes]
rs12527242	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12527246	0.88[ASN][1000 genomes]
rs12527249	0.88[ASN][1000 genomes]
rs12530262	0.90[ASN][1000 genomes]
rs13212664	0.90[ASN][1000 genomes]
rs1436856	0.90[ASN][1000 genomes]
rs1436857	0.90[ASN][1000 genomes]
rs1436858	0.90[ASN][1000 genomes]
rs1436859	0.90[ASN][1000 genomes]
rs1436860	0.90[ASN][1000 genomes]
rs1898308	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1992103	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs206688	0.94[ASN][1000 genomes]
rs34312142	0.94[ASN][1000 genomes]
rs35317099	0.90[ASN][1000 genomes]
rs35965781	0.81[ASN][1000 genomes]
rs366572	0.94[ASN][1000 genomes]
rs368303	0.92[ASN][1000 genomes]
rs369635	0.94[ASN][1000 genomes]
rs377662	0.94[ASN][1000 genomes]
rs379046	0.94[ASN][1000 genomes]
rs379084	0.94[ASN][1000 genomes]
rs380640	0.94[ASN][1000 genomes]
rs383861	0.94[ASN][1000 genomes]
rs384090	0.94[ASN][1000 genomes]
rs386112	0.94[ASN][1000 genomes]
rs390097	0.94[ASN][1000 genomes]
rs390662	0.94[ASN][1000 genomes]
rs392649	0.94[ASN][1000 genomes]
rs396207	0.92[ASN][1000 genomes]
rs407411	0.93[ASN][1000 genomes]
rs411505	0.94[ASN][1000 genomes]
rs412544	0.94[ASN][1000 genomes]
rs412553	0.94[ASN][1000 genomes]
rs414708	0.94[ASN][1000 genomes]
rs418309	0.94[ASN][1000 genomes]
rs418319	0.94[ASN][1000 genomes]
rs419927	0.94[ASN][1000 genomes]
rs422371	0.94[ASN][1000 genomes]
rs422805	0.94[ASN][1000 genomes]
rs429361	0.94[ASN][1000 genomes]
rs445855	0.92[ASN][1000 genomes]
rs71569438	0.88[ASN][1000 genomes]
rs71569439	0.88[ASN][1000 genomes]
rs9346989	0.94[ASN][1000 genomes]
rs9346990	0.94[ASN][1000 genomes]
rs9346991	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9347815	0.91[ASN][1000 genomes]
rs9347816	0.94[ASN][1000 genomes]
rs9347817	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9355456	0.81[ASN][1000 genomes]
rs9355457	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9355459	0.90[ASN][1000 genomes]
rs9364713	0.81[EUR][1000 genomes]
rs9364714	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9364715	0.94[ASN][1000 genomes]
rs9365649	0.94[ASN][1000 genomes]
rs9365652	0.92[ASN][1000 genomes]
rs9365656	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830858	chr6:164296054-164455743	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1019703	chr6:164424683-164488780	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164443200-164459000	Weak transcription	Spleen	Spleen
2	chr6:164445000-164457400	Weak transcription	Fetal Heart	heart
3	chr6:164446400-164462800	Weak transcription	Right Atrium	heart
4	chr6:164453000-164457600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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