Variant report

Variant	rs12209273
Chromosome Location	chr6:33849073-33849074
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33805713..33808013-chr6:33847998..33849613,2	K562	blood:
2	chr6:33730312..33733510-chr6:33847562..33850265,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1408503	1.00[AFR][1000 genomes]
rs1535940	1.00[AFR][1000 genomes]
rs2093907	1.00[AFR][1000 genomes]
rs2477228	1.00[AFR][1000 genomes]
rs2477231	1.00[AFR][1000 genomes]
rs2477235	1.00[AFR][1000 genomes]
rs2477236	1.00[AFR][1000 genomes]
rs2499737	1.00[AFR][1000 genomes]
rs9296103	1.00[AFR][1000 genomes]
rs9368781	1.00[AFR][1000 genomes]
rs942509	1.00[AFR][1000 genomes]
rs942510	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33844200-33852600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:33846400-33849200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:33846600-33849200	Weak transcription	Pancreas	Pancrea
4	chr6:33847200-33849200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:33847200-33852000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:33847600-33849400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:33847600-33852600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:33848000-33849200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:33848000-33849200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:33848200-33849200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:33848200-33849600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:33848200-33849800	Weak transcription	Fetal Intestine Large	intestine
13	chr6:33848200-33852800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:33848200-33853000	Weak transcription	Colonic Mucosa	Colon
15	chr6:33848600-33849200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:33848600-33850600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:33848800-33850000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:33848800-33850200	Enhancers	Spleen	Spleen
19	chr6:33848800-33850400	Enhancers	Fetal Intestine Small	intestine
20	chr6:33849000-33850000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:33849000-33850000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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