Variant report

Variant	rs9368781
Chromosome Location	chr6:33868879-33868880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33865205..33866951-chr6:33868393..33870206,2	MCF-7	breast:
2	chr6:33864701..33867431-chr6:33868454..33870776,4	K562	blood:
3	chr6:33863866..33866857-chr6:33868075..33870353,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ITPR3-5	chr6:33868399-33871654	NONHSAT110812

Variant related genes	Relation type
ENSG00000249346	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10807129	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209273	1.00[AFR][1000 genomes]
rs1324579	0.95[EUR][1000 genomes]
rs1408503	0.91[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1535940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535943	0.87[EUR][1000 genomes]
rs1535944	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535947	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1969843	0.91[EUR][1000 genomes]
rs2093907	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147423	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147426	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147427	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147428	1.00[ASN][1000 genomes]
rs2181916	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477228	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477231	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477232	0.94[EUR][1000 genomes]
rs2477235	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477236	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477237	0.94[EUR][1000 genomes]
rs2499681	0.80[EUR][1000 genomes]
rs2499737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711364	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs4711365	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713715	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4713716	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4713717	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4713721	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457747	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6921366	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9296103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942506	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs942508	1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942510	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942511	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33850000-33871800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:33864000-33870800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:33864800-33869600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:33865000-33871200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:33865400-33869400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:33865400-33870400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:33865600-33869800	Weak transcription	Primary T cells from cord blood	blood
8	chr6:33865600-33870200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:33865600-33870400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:33865600-33870400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:33865600-33870600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:33865600-33870600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:33865600-33871600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:33865600-33883000	Weak transcription	Esophagus	oesophagus
15	chr6:33866000-33870200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:33866000-33871800	Weak transcription	Pancreas	Pancrea
17	chr6:33866400-33871800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:33866600-33871600	Enhancers	Fetal Thymus	thymus
19	chr6:33867600-33869800	Enhancers	Thymus	Thymus
20	chr6:33868200-33871600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:33868200-33877800	Enhancers	Primary hematopoietic stem cells	blood
22	chr6:33868600-33871400	Weak transcription	Spleen	Spleen
23	chr6:33868800-33869600	Enhancers	K562	blood
24	chr6:33868800-33871800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:33868800-33871800	Weak transcription	Liver	Liver

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