Variant report

Variant	rs2147428
Chromosome Location	chr6:33893513-33893514
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33887758..33891673-chr6:33891780..33895604,5	K562	blood:
2	chr6:33889301..33891295-chr6:33893336..33896618,3	MCF-7	breast:
3	chr6:33893477..33895597-chr6:33913163..33915930,2	K562	blood:
4	chr6:33892310..33894285-chr6:33898684..33900893,3	K562	blood:
5	chr6:33885575..33887845-chr6:33891756..33894139,2	MCF-7	breast:
6	chr6:33892310..33894351-chr6:33897735..33900618,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ITPR3-1	chr6:33892111-33895408	ENSG00000233183

No data

No data

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10807129	1.00[ASN][1000 genomes]
rs1535940	1.00[ASN][1000 genomes]
rs1535941	1.00[ASN][1000 genomes]
rs1535944	1.00[ASN][1000 genomes]
rs1535945	1.00[ASN][1000 genomes]
rs1535946	1.00[ASN][1000 genomes]
rs1535947	1.00[ASN][1000 genomes]
rs2093907	1.00[ASN][1000 genomes]
rs2147423	1.00[ASN][1000 genomes]
rs2147426	1.00[ASN][1000 genomes]
rs2147427	1.00[ASN][1000 genomes]
rs2181916	1.00[ASN][1000 genomes]
rs2477228	1.00[ASN][1000 genomes]
rs2477231	1.00[ASN][1000 genomes]
rs2477235	1.00[ASN][1000 genomes]
rs2477236	1.00[ASN][1000 genomes]
rs2499737	1.00[ASN][1000 genomes]
rs4711365	1.00[ASN][1000 genomes]
rs4713721	1.00[ASN][1000 genomes]
rs9296103	1.00[ASN][1000 genomes]
rs9368781	1.00[ASN][1000 genomes]
rs942508	1.00[ASN][1000 genomes]
rs942509	1.00[ASN][1000 genomes]
rs942510	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3409018	chr6:33890574-33894172	Enhancers Bivalent Enhancer Weak transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33886600-33894600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33891600-33893800	Enhancers	Spleen	Spleen
3	chr6:33891800-33894000	Enhancers	Ovary	ovary
4	chr6:33892200-33895600	Enhancers	Brain Germinal Matrix	brain
5	chr6:33892400-33894200	Enhancers	Fetal Brain Male	brain
6	chr6:33893000-33894000	Enhancers	Lung	lung
7	chr6:33893000-33894400	Enhancers	Fetal Brain Female	brain
8	chr6:33893000-33895200	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:33893200-33894000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:33893200-33897600	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links