Variant report

Variant	rs942508
Chromosome Location	chr6:33875504-33875505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33869569..33871113-chr6:33874959..33876852,2	K562	blood:
2	chr6:33874668..33878393-chr6:33879974..33881906,3	K562	blood:
3	chr6:33871240..33875960-chr6:33876004..33878253,4	K562	blood:
4	chr6:33854576..33856833-chr6:33873252..33875998,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ITPR3-1	chr6:33874641-33875578	XLOC_005263

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10807129	1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324579	0.97[EUR][1000 genomes]
rs1408503	0.91[EUR][1000 genomes]
rs1535940	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535941	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535943	0.90[EUR][1000 genomes]
rs1535944	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535945	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535946	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535947	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1969843	0.94[EUR][1000 genomes]
rs2093907	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147423	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147426	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147427	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147428	1.00[ASN][1000 genomes]
rs2181916	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477228	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477231	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477232	0.96[EUR][1000 genomes]
rs2477235	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477236	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477237	0.96[EUR][1000 genomes]
rs2499681	0.82[EUR][1000 genomes]
rs2499737	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711364	1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs4711365	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713715	0.95[EUR][1000 genomes]
rs4713716	0.95[EUR][1000 genomes]
rs4713717	0.95[EUR][1000 genomes]
rs4713721	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457747	0.95[EUR][1000 genomes]
rs6921366	0.95[EUR][1000 genomes]
rs9296103	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368781	1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942506	0.95[EUR][1000 genomes]
rs942509	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942510	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942511	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33865600-33883000	Weak transcription	Esophagus	oesophagus
2	chr6:33868200-33877800	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:33870800-33876600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:33871600-33876400	Enhancers	Fetal Intestine Small	intestine
5	chr6:33871800-33875600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:33872800-33878000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:33872800-33878800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:33873000-33876400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:33873000-33876400	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:33873000-33884000	Enhancers	Fetal Thymus	thymus
11	chr6:33873200-33876000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:33873200-33876600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:33873200-33877400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:33873200-33878200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:33873400-33875600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr6:33873400-33876800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:33873400-33878000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr6:33873400-33878000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:33873400-33878400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:33873400-33883800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr6:33873600-33876400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr6:33873800-33877000	Enhancers	Primary T cells from cord blood	blood
23	chr6:33873800-33879000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr6:33873800-33882000	Weak transcription	Spleen	Spleen
25	chr6:33874000-33881800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:33874200-33876800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:33874200-33882200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:33874200-33889200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:33874400-33875800	Weak transcription	K562	blood
30	chr6:33874400-33877800	Enhancers	Liver	Liver
31	chr6:33874600-33876400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:33874600-33878000	Enhancers	Fetal Intestine Large	intestine
33	chr6:33874800-33875600	Enhancers	Pancreas	Pancrea
34	chr6:33874800-33876200	Enhancers	Fetal Kidney	kidney
35	chr6:33875000-33876600	Enhancers	Primary B cells from cord blood	blood
36	chr6:33875000-33876800	Enhancers	GM12878-XiMat	blood
37	chr6:33875200-33875600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:33875400-33875600	Enhancers	Small Intestine	intestine
39	chr6:33875400-33875600	Flanking Active TSS	HepG2	liver
40	chr6:33875400-33875800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:33875400-33881400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:33875400-33881400	Weak transcription	Thymus	Thymus

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