Variant report

Variant	rs1324579
Chromosome Location	chr6:33900815-33900816
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33892310..33894285-chr6:33898684..33900893,3	K562	blood:
2	chr6:33899516..33901921-chr6:33904882..33906731,2	K562	blood:
3	chr6:33897589..33900344-chr6:33900487..33902358,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10807129	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs1408503	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs1535940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs1535941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs1535943	0.87[EUR][1000 genomes]
rs1535944	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs1535945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs1535946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs1535947	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs1969843	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2093907	0.95[EUR][1000 genomes]
rs2147423	0.97[EUR][1000 genomes]
rs2147426	0.99[EUR][1000 genomes]
rs2147427	1.00[EUR][1000 genomes]
rs2181916	0.97[EUR][1000 genomes]
rs2477228	0.99[EUR][1000 genomes]
rs2477231	0.99[EUR][1000 genomes]
rs2477232	0.99[EUR][1000 genomes]
rs2477235	1.00[EUR][1000 genomes]
rs2477236	1.00[EUR][1000 genomes]
rs2477237	0.99[EUR][1000 genomes]
rs2499681	0.82[EUR][1000 genomes]
rs2499737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes]
rs4711364	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs4711365	1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs4713715	0.93[EUR][1000 genomes]
rs4713716	0.93[EUR][1000 genomes]
rs4713717	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4713721	0.97[EUR][1000 genomes]
rs6457747	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6921366	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9296103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs9368781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs942506	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs942508	1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs942509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs942510	1.00[CEU][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes]
rs942511	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33894600-33902600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:33898000-33903000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:33898800-33903000	Weak transcription	Fetal Kidney	kidney

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