Variant report

Variant	rs2147426
Chromosome Location	chr6:33891983-33891984
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33881007..33883115-chr6:33890110..33892674,2	MCF-7	breast:
2	chr6:33887758..33891673-chr6:33891780..33895604,5	K562	blood:
3	chr6:33890903..33893411-chr6:33904076..33906137,2	MCF-7	breast:
4	chr6:33881960..33884632-chr6:33890254..33892138,2	MCF-7	breast:
5	chr6:33885575..33887845-chr6:33891756..33894139,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10807129	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324579	0.99[EUR][1000 genomes]
rs1408503	0.90[EUR][1000 genomes]
rs1535940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535943	0.88[EUR][1000 genomes]
rs1535944	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1969843	0.95[EUR][1000 genomes]
rs2093907	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147423	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147427	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147428	1.00[ASN][1000 genomes]
rs2181916	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477232	0.97[EUR][1000 genomes]
rs2477235	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477236	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477237	0.97[EUR][1000 genomes]
rs2499681	0.83[EUR][1000 genomes]
rs2499737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711364	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4711365	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713715	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4713716	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4713717	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4713721	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457747	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6921366	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9296103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942506	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs942508	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942509	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942510	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942511	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3409018	chr6:33890574-33894172	Enhancers Bivalent Enhancer Weak transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33886600-33894600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33889600-33892400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:33889800-33892400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr6:33889800-33893200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:33890600-33892200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:33890600-33892600	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:33890600-33893400	Enhancers	Fetal Thymus	thymus
8	chr6:33890800-33892000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:33891400-33892000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr6:33891400-33892200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:33891400-33892200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:33891400-33892200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:33891400-33892200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:33891400-33892200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:33891400-33892400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:33891600-33892000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:33891600-33892200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:33891600-33892200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:33891600-33892200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:33891600-33892200	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr6:33891600-33893400	Enhancers	Pancreas	Pancrea
22	chr6:33891600-33893800	Enhancers	Spleen	Spleen
23	chr6:33891800-33892000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:33891800-33893000	Weak transcription	Fetal Lung	lung
25	chr6:33891800-33894000	Enhancers	Ovary	ovary

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