Variant report

Variant	rs942506
Chromosome Location	chr6:33866907-33866908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33865205..33866951-chr6:33868393..33870206,2	MCF-7	breast:
2	chr6:33864701..33867431-chr6:33868454..33870776,4	K562	blood:
3	chr6:33865276..33866943-chr6:33949912..33952206,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10807129	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1324579	0.93[EUR][1000 genomes]
rs1408503	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs1535940	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1535941	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1535943	0.85[EUR][1000 genomes]
rs1535944	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1535945	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1535946	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1535947	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1969843	0.89[EUR][1000 genomes]
rs2093907	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2147423	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2147426	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2147427	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2181916	0.90[EUR][1000 genomes]
rs2477228	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2477231	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2477232	0.94[EUR][1000 genomes]
rs2477235	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2477236	0.93[EUR][1000 genomes]
rs2477237	0.94[EUR][1000 genomes]
rs2499681	0.80[EUR][1000 genomes]
rs2499737	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4711364	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs4711365	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4713715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4713717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713721	0.95[EUR][1000 genomes]
rs6457747	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6921366	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9296103	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9368781	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs942508	0.95[EUR][1000 genomes]
rs942509	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs942510	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33850000-33871800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:33862400-33867000	Weak transcription	Spleen	Spleen
3	chr6:33864000-33870800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:33864800-33869600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:33865000-33871200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:33865200-33868200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:33865200-33868800	Weak transcription	K562	blood
8	chr6:33865400-33868800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:33865400-33869400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:33865400-33870400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:33865600-33867200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:33865600-33867600	Weak transcription	Thymus	Thymus
13	chr6:33865600-33868200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:33865600-33869800	Weak transcription	Primary T cells from cord blood	blood
15	chr6:33865600-33870200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:33865600-33870400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:33865600-33870400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:33865600-33870600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:33865600-33870600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:33865600-33871600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:33865600-33883000	Weak transcription	Esophagus	oesophagus
22	chr6:33866000-33870200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:33866000-33871800	Weak transcription	Pancreas	Pancrea
24	chr6:33866400-33871800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:33866600-33871600	Enhancers	Fetal Thymus	thymus

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