Variant report

Variant	rs12209597
Chromosome Location	chr6:142104938-142104939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1016245	0.81[AMR][1000 genomes]
rs11155203	1.00[ASN][1000 genomes]
rs12192435	0.83[EUR][1000 genomes]
rs12196285	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202995	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13199090	0.91[ASN][1000 genomes]
rs2064481	0.84[EUR][1000 genomes]
rs2207236	1.00[ASN][1000 genomes]
rs2223924	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs67686972	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6916753	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6917355	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6927997	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6936548	0.81[AMR][1000 genomes]
rs6940233	0.81[AMR][1000 genomes]
rs7450452	0.86[EUR][1000 genomes]
rs7762021	0.86[EUR][1000 genomes]
rs9285495	0.82[EUR][1000 genomes]
rs9321840	0.81[AMR][1000 genomes]
rs9484552	0.87[EUR][1000 genomes]
rs9484553	0.87[EUR][1000 genomes]
rs9484557	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9484558	0.82[EUR][1000 genomes]
rs9484559	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9484564	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9496143	0.87[EUR][1000 genomes]
rs9496146	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025706	chr6:141909953-142131906	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538456	chr6:141909953-142131906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1032184	chr6:141909953-142234993	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1032444	chr6:142066183-142199093	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv604789	chr6:142074024-142112455	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv523425	chr6:142074024-142130009	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv525384	chr6:142074024-142130009	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142104400-142105400	Enhancers	Liver	Liver

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