Variant report

Variant	rs6936548
Chromosome Location	chr6:142151447-142151448
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1015163	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1016245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12192435	0.93[EUR][1000 genomes]
rs12202995	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12209597	0.81[AMR][1000 genomes]
rs2064481	0.93[EUR][1000 genomes]
rs2207235	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2223924	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35461728	0.86[EUR][1000 genomes]
rs67686972	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6916753	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6917355	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6927997	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6940233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7450452	0.87[EUR][1000 genomes]
rs7750605	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7755310	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7762021	0.88[EUR][1000 genomes]
rs9285495	0.91[EUR][1000 genomes]
rs9321840	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321841	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9484552	0.89[EUR][1000 genomes]
rs9484553	0.89[EUR][1000 genomes]
rs9484557	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9484558	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9484559	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9484564	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9484565	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9496143	0.89[EUR][1000 genomes]
rs9496146	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9496163	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9496164	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9496166	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9496167	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9496168	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032184	chr6:141909953-142234993	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1032444	chr6:142066183-142199093	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv830823	chr6:142111420-142305417	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv464066	chr6:142130009-142236578	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv604790	chr6:142130009-142236578	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886728	chr6:142130009-142245981	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1029504	chr6:142131846-142333198	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv538458	chr6:142131846-142333198	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3434839	chr6:142133308-142165107	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1017195	chr6:142142454-142336722	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142148600-142152400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:142148800-142152400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:142148800-142152400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:142149800-142151600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:142149800-142152400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:142150200-142151800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:142150200-142152200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:142150200-142154400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:142150400-142151600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:142150400-142151800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:142150600-142152000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr6:142150800-142152200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:142150800-142152400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:142150800-142152400	Enhancers	Placenta	Placenta
15	chr6:142150800-142152600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr6:142151000-142151600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:142151000-142154600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:142151200-142151800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:142151400-142151600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:142151400-142152200	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links