Variant report

Variant	rs12209775
Chromosome Location	chr6:37372370-37372371
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11756241	0.81[EUR][1000 genomes]
rs12200378	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1874736	0.84[EUR][1000 genomes]
rs2173313	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2270687	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4714066	0.85[EUR][1000 genomes]
rs4714068	0.84[EUR][1000 genomes]
rs62406510	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9380673	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520294	chr6:37360557-37380324	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12209775	RP1-153P14.8	cis	Whole Blood	GTEx
rs12209775	RP1-153P14.5	cis	Whole Blood	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37359000-37372600	Weak transcription	Stomach Mucosa	stomach
2	chr6:37359600-37374000	Weak transcription	NHEK	skin
3	chr6:37362800-37374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:37363800-37373800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:37363800-37374000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:37368600-37373600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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