Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37357575..37360002-chr6:37390264..37392492,2	MCF-7	breast:
2	chr6:37389971..37393834-chr6:37440150..37443110,4	MCF-7	breast:
3	chr6:37290599..37292900-chr6:37390289..37392598,3	K562	blood:
4	chr6:37388900..37391581-chr6:37403584..37406042,2	MCF-7	breast:
5	chr6:37384249..37387029-chr6:37388839..37391579,3	K562	blood:
6	chr6:37390262..37393860-chr6:37393896..37398106,6	MCF-7	breast:
7	chr6:37383701..37387029-chr6:37388839..37391915,5	K562	blood:
8	chr6:37322263..37324339-chr6:37389226..37391465,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137200	Chromatin interaction

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11756241	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12200378	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12209775	0.85[EUR][1000 genomes]
rs12211110	0.81[EUR][1000 genomes]
rs1874736	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2173313	0.83[EUR][1000 genomes]
rs2270687	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4714068	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62406510	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9380673	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807065	chr6:37379409-37399185	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4714066	RP1-153P14.5	cis	Whole Blood	GTEx
rs4714066	RP1-153P14.8	cis	Whole Blood	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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