Variant report

Variant	rs12210982
Chromosome Location	chr6:27174235-27174236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:27173431-27174281	K562	blood:	n/a	chr6:27173741-27173751 chr6:27173740-27173751 chr6:27173740-27173751 chr6:27173741-27173750 chr6:27173740-27173750 chr6:27173739-27173752 chr6:27173739-27173752 chr6:27173741-27173750 chr6:27173740-27173750 chr6:27173740-27173751 chr6:27173740-27173751 chr6:27173740-27173749 chr6:27173741-27173750 chr6:27173741-27173751
2	EP300	chr6:27174191-27174274	K562	blood:	n/a	n/a
3	YY1	chr6:27174208-27174386	K562	blood:	n/a	n/a
4	RCOR1	chr6:27173749-27174345	K562	blood:	n/a	n/a
5	BHLHE40	chr6:27173737-27174369	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:27171643..27174637-chr6:27189780..27192131,2	K562	blood:
2	chr6:27172666..27175265-chr6:27265465..27267285,2	K562	blood:
3	chr6:27113325..27119101-chr6:27172973..27177922,8	K562	blood:
4	chr6:27170157..27172532-chr6:27173101..27175252,2	MCF-7	breast:
5	chr6:27173443..27175541-chr6:27778725..27781351,2	K562	blood:
6	chr6:27124389..27126074-chr6:27173688..27175728,2	K562	blood:
7	chr6:27173503..27175010-chr6:27857886..27860275,2	K562	blood:
8	chr6:27162610..27164330-chr6:27172522..27175063,2	K562	blood:
9	chr6:27164413..27166775-chr6:27172734..27175506,2	K562	blood:

Variant related genes	Relation type
ENSG00000174572	TF binding region
ENSG00000265565	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000184825	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11756638	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201477	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12201604	1.00[ASN][1000 genomes]
rs12203259	1.00[ASN][1000 genomes]
rs12207760	1.00[ASN][1000 genomes]
rs12210403	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12210888	1.00[ASN][1000 genomes]
rs12210899	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12211817	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4713091	1.00[ASN][1000 genomes]
rs72838244	1.00[ASN][1000 genomes]
rs7756309	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27173200-27174400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:27173200-27174400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr6:27173200-27174400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr6:27173200-27174600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:27173400-27174400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:27173400-27174400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:27173400-27174400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
8	chr6:27173400-27174400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:27173400-27174400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
10	chr6:27173400-27174400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
11	chr6:27173400-27174400	Bivalent/Poised TSS	Osteobl	bone
12	chr6:27173600-27174400	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:27173600-27174400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
14	chr6:27173600-27174400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
15	chr6:27173600-27174400	Bivalent Enhancer	Fetal Thymus	thymus
16	chr6:27173800-27174400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:27174000-27174400	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr6:27174000-27174600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
19	chr6:27174000-27174600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
20	chr6:27174000-27174600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:27174000-27175800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:27174000-27179600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:27174200-27174400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
24	chr6:27174200-27174400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
25	chr6:27174200-27174400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:27174200-27174400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr6:27174200-27174400	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:27174200-27174400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
29	chr6:27174200-27174400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:27174200-27174400	Bivalent Enhancer	Fetal Kidney	kidney
31	chr6:27174200-27174400	Bivalent Enhancer	Fetal Lung	lung
32	chr6:27174200-27174400	Bivalent Enhancer	Small Intestine	intestine
33	chr6:27174200-27174400	Enhancers	GM12878-XiMat	blood
34	chr6:27174200-27174600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
35	chr6:27174200-27174600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:27174200-27174600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
37	chr6:27174200-27174600	Flanking Active TSS	K562	blood
38	chr6:27174200-27176200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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