Variant report

Variant	rs4713091
Chromosome Location	chr6:27356867-27356868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27113785..27116304-chr6:27356399..27358052,2	K562	blood:
2	chr6:27356277..27359093-chr6:27439899..27443040,4	MCF-7	breast:
3	chr6:27114804..27117756-chr6:27356552..27360776,4	K562	blood:
4	chr6:27354651..27357206-chr6:27439212..27442131,3	K562	blood:
5	chr6:27356362..27358956-chr6:27773296..27775539,3	K562	blood:
6	chr6:27341304..27343058-chr6:27356076..27357820,2	MCF-7	breast:
7	chr6:27342371..27343890-chr6:27355850..27358027,2	K562	blood:
8	chr6:27291445..27294642-chr6:27355178..27358043,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF184-3	chr6:27356046-27357004	NONHSAT108378

No data

Variant related genes	Relation type
ENSG00000220758	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000124613	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000096654	Chromatin interaction
ENSG00000197903	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10456356	1.00[ASN][1000 genomes]
rs11756638	1.00[ASN][1000 genomes]
rs12154137	1.00[ASN][1000 genomes]
rs12201477	1.00[ASN][1000 genomes]
rs12203259	1.00[ASN][1000 genomes]
rs12209038	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12210403	1.00[ASN][1000 genomes]
rs12210899	1.00[ASN][1000 genomes]
rs12210982	1.00[ASN][1000 genomes]
rs12211424	1.00[ASN][1000 genomes]
rs12211817	1.00[ASN][1000 genomes]
rs12212404	1.00[ASN][1000 genomes]
rs12213302	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456787	1.00[ASN][1000 genomes]
rs6922060	1.00[AMR][1000 genomes]
rs7756309	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv3439048	chr6:27351973-27357171	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
4	nsv1031803	chr6:27355881-27423655	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv538166	chr6:27355881-27423655	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv517557	chr6:27356527-27356925	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27355000-27357400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:27355600-27357600	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr6:27355600-27358400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:27355800-27357000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:27355800-27357000	Active TSS	Brain Angular Gyrus	brain
6	chr6:27355800-27357000	Active TSS	HMEC	breast
7	chr6:27355800-27357200	Active TSS	Muscle Satellite Cultured Cells	--
8	chr6:27355800-27357200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:27355800-27357200	Active TSS	Aorta	Aorta
10	chr6:27355800-27357200	Active TSS	Brain Hippocampus Middle	brain
11	chr6:27355800-27357200	Active TSS	Fetal Brain Male	brain
12	chr6:27355800-27357200	Active TSS	Right Ventricle	heart
13	chr6:27355800-27357200	Active TSS	A549	lung
14	chr6:27355800-27357200	Flanking Active TSS	HUVEC	blood vessel
15	chr6:27355800-27357200	Active TSS	K562	blood
16	chr6:27355800-27357200	Active TSS	NHDF-Ad	bronchial
17	chr6:27355800-27357400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr6:27355800-27357400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:27355800-27357400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:27355800-27357400	Active TSS	Brain Cingulate Gyrus	brain
21	chr6:27355800-27357400	Active TSS	Fetal Brain Female	brain
22	chr6:27355800-27357400	Active TSS	Fetal Intestine Small	intestine
23	chr6:27355800-27357400	Active TSS	Rectal Smooth Muscle	rectum
24	chr6:27355800-27357400	Active TSS	NHLF	lung
25	chr6:27355800-27357600	Active TSS	H9 Cell Line	embryonic stem cell
26	chr6:27355800-27357600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:27355800-27357600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:27355800-27357600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:27355800-27357600	Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr6:27355800-27357600	Active TSS	Stomach Smooth Muscle	stomach
31	chr6:27355800-27357600	Active TSS	NHEK	skin
32	chr6:27355800-27357800	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr6:27355800-27357800	Active TSS	H1 Cell Line	embryonic stem cell
34	chr6:27355800-27357800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:27355800-27357800	Active TSS	GM12878-XiMat	blood
36	chr6:27355800-27358000	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr6:27355800-27358000	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr6:27356000-27357000	Active TSS	Fetal Lung	lung
39	chr6:27356000-27357000	Active TSS	Left Ventricle	heart
40	chr6:27356000-27357000	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr6:27356000-27357000	Active TSS	HSMMtube	muscle
42	chr6:27356000-27357200	Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr6:27356000-27357200	Flanking Active TSS	Liver	Liver
44	chr6:27356000-27357200	Active TSS	Brain Germinal Matrix	brain
45	chr6:27356000-27357200	Active TSS	Esophagus	oesophagus
46	chr6:27356000-27357200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr6:27356000-27357400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:27356000-27357400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:27356000-27357400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:27356000-27357400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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