Variant report

Variant	rs6456787
Chromosome Location	chr6:27416189-27416190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27414915..27419456-chr6:27425103..27430538,5	MCF-7	breast:
2	chr6:27383453..27385090-chr6:27415473..27417741,2	K562	blood:
3	chr6:27414265..27420654-chr6:27420859..27426179,12	K562	blood:
4	chr6:27411256..27412951-chr6:27415648..27418447,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10456356	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12154137	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12201477	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12203259	1.00[ASN][1000 genomes]
rs12209038	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12210403	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12211424	1.00[ASN][1000 genomes]
rs12212404	1.00[ASN][1000 genomes]
rs12213302	1.00[ASN][1000 genomes]
rs4711160	1.00[ASN][1000 genomes]
rs4713091	1.00[ASN][1000 genomes]
rs7756309	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1031803	chr6:27355881-27423655	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv538166	chr6:27355881-27423655	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27411200-27417600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:27412600-27438000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:27413400-27418000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:27413600-27417800	Weak transcription	Fetal Heart	heart
5	chr6:27413600-27425600	ZNF genes & repeats	Fetal Brain Female	brain
6	chr6:27414000-27425600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr6:27414200-27430600	ZNF genes & repeats	Liver	Liver
8	chr6:27414400-27416400	Weak transcription	Psoas Muscle	Psoas
9	chr6:27414400-27432000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr6:27414600-27416400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:27414600-27417200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:27414600-27417200	Weak transcription	Fetal Stomach	stomach
13	chr6:27414600-27417200	Weak transcription	Pancreas	Pancrea
14	chr6:27414800-27416200	Weak transcription	Brain Substantia Nigra	brain
15	chr6:27414800-27419000	Weak transcription	Thymus	Thymus
16	chr6:27415400-27425400	ZNF genes & repeats	Brain Germinal Matrix	brain
17	chr6:27415400-27425800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
18	chr6:27415400-27430000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:27415400-27438600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:27415600-27416800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
21	chr6:27415600-27417200	Weak transcription	Fetal Thymus	thymus
22	chr6:27415600-27417800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
23	chr6:27415600-27421000	ZNF genes & repeats	Left Ventricle	heart
24	chr6:27415600-27425200	ZNF genes & repeats	Fetal Lung	lung
25	chr6:27415600-27425400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
26	chr6:27415600-27425400	ZNF genes & repeats	HSMMtube	muscle
27	chr6:27415600-27425600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:27415600-27425600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr6:27415600-27425600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:27415600-27427400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
31	chr6:27415600-27429800	ZNF genes & repeats	Dnd41	blood
32	chr6:27415600-27430000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:27415600-27430000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:27415600-27430200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr6:27415800-27417000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:27415800-27424800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
37	chr6:27415800-27425800	ZNF genes & repeats	Primary T cells from cord blood	blood
38	chr6:27415800-27430000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:27415800-27430200	ZNF genes & repeats	Primary B cells from cord blood	blood
40	chr6:27415800-27434000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
41	chr6:27416000-27416600	ZNF genes & repeats	Brain Hippocampus Middle	brain
42	chr6:27416000-27425400	ZNF genes & repeats	Fetal Muscle Leg	muscle
43	chr6:27416000-27432400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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