Variant report

Variant	rs12213302
Chromosome Location	chr6:27476561-27476562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10456356	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154137	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201477	1.00[ASN][1000 genomes]
rs12209038	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211424	1.00[ASN][1000 genomes]
rs12212404	1.00[ASN][1000 genomes]
rs2393997	1.00[ASN][1000 genomes]
rs4711160	1.00[ASN][1000 genomes]
rs4713091	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456787	1.00[ASN][1000 genomes]
rs6930169	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7748123	1.00[ASN][1000 genomes]
rs7756309	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv462665	chr6:27458013-27547792	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv601203	chr6:27458013-27547792	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27471600-27479800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:27474200-27480000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:27475000-27479800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:27475400-27476800	Weak transcription	K562	blood
5	chr6:27475400-27482400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:27475400-27482600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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