Variant report
| Variant | rs4711160 |
|---|---|
| Chromosome Location | chr6:27616489-27616490 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:27603054..27606000-chr6:27615996..27618883,2 | K562 | blood: | |
| 2 | chr6:27562721..27564911-chr6:27615455..27617830,2 | K562 | blood: | |
| 3 | chr6:27608258..27610952-chr6:27614931..27616951,2 | K562 | blood: | |
| 4 | chr6:27615823..27619826-chr6:27719510..27721663,4 | K562 | blood: | |
| 5 | chr6:27615823..27619826-chr6:27718831..27721663,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000206671 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10456356 | 1.00[ASN][1000 genomes] |
| rs12154137 | 1.00[ASN][1000 genomes] |
| rs12209038 | 1.00[ASN][1000 genomes] |
| rs12211424 | 1.00[ASN][1000 genomes] |
| rs12212404 | 1.00[ASN][1000 genomes] |
| rs12213302 | 1.00[ASN][1000 genomes] |
| rs2393997 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs645666 | 1.00[ASN][1000 genomes] |
| rs6456787 | 1.00[ASN][1000 genomes] |
| rs6930169 | 1.00[ASN][1000 genomes] |
| rs7748123 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022797 | chr6:27396961-27864277 | Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 390 gene(s) | inside rSNPs | diseases |
| 2 | nsv883510 | chr6:27550712-27730064 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 37 gene(s) | inside rSNPs | diseases |
| 3 | nsv1023673 | chr6:27570731-27688782 | Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 34 gene(s) | inside rSNPs | diseases |
| 4 | nsv830618 | chr6:27593274-27789605 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 143 gene(s) | inside rSNPs | diseases |
| 5 | nsv1031337 | chr6:27596676-27734884 | Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4711160 | ZNF391 | cis | Nerve Tibial | GTEx |
| rs4711160 | ZNF391 | cis | Artery Tibial | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:27612800-27618200 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr6:27615800-27616600 | Flanking Active TSS | K562 | blood |
